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QS_4_Halobacteriales_69_14

In projects: QS_4  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QS_4_UNK

Properties

Avg. coverage: 14.31 Longest contig: 32.47 Kbp Bin length: 1.89 Mbp GC content: 69.15 %
Contigs count: 302 Features count: 2161 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 20 / 55 MC: 1 BSCG 16 / 51 MC: 1 ASCG 21 / 38
Displaying items 1-50 of 302 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qs_4_scaffold_1563
Order: Halobacteriales (67.65%)
34 32472 bp 69.53 15.72 88.02
qs_4_scaffold_813
Class: Halobacteria (82.14%)
28 24091 bp 65.88 13.36 79.97
qs_4_scaffold_814
Class: Halobacteria (80.95%)
21 22015 bp 67.80 13.07 62.13
qs_4_scaffold_1353
Order: Halobacteriales (71.43%)
14 17907 bp 70.49 16.52 85.56
qs_4_scaffold_1514
Order: Halobacteriales (50%)
20 17574 bp 70.39 16.17 85.56
qs_4_scaffold_856
Class: Halobacteria (61.54%)
13 16058 bp 70.28 15.46 87.32
qs_4_scaffold_2303
Class: Halobacteria (72.22%)
18 15215 bp 67.96 14.39 83.23
qs_4_scaffold_2003
Order: Halobacteriales (58.82%)
17 14899 bp 70.09 14.85 82.27
qs_4_scaffold_1494
Class: Halobacteria (72.22%)
18 14687 bp 66.87 13.51 81.89
qs_4_scaffold_2357
Class: Halobacteria (100%)
14 14492 bp 67.60 14.42 81.89
qs_4_scaffold_1433
Order: Halobacteriales (53.33%)
15 14459 bp 69.54 15.49 81.33
qs_4_scaffold_995
Order: Halobacteriales (50%)
18 14224 bp 67.13 14.65 83.51
qs_4_scaffold_2383
Order: Halobacteriales (69.23%)
13 14042 bp 72.67 16.84 83.15
qs_4_scaffold_1608
Order: Halobacteriales (50%)
16 13969 bp 69.32 14.45 80.29
qs_4_scaffold_1028
Order: Natrialbales (50%)
16 13869 bp 69.85 13.87 86.18
qs_4_scaffold_1299
Order: Halobacteriales (61.54%)
13 13690 bp 71.39 15.36 81.15
qs_4_scaffold_1074
Order: Halobacteriales (50%)
16 13388 bp 72.62 14.39 88.06
qs_4_scaffold_1720
Genus: Natronomonas (50%)
14 13141 bp 69.87 16.93 86.50
qs_4_scaffold_1316
Class: Halobacteria (90.91%)
11 12832 bp 69.83 15.87 77.43
qs_4_scaffold_1642
Class: Halobacteria (50%)
14 12655 bp 68.91 13.40 81.07
qs_4_scaffold_2832
Order: Halobacteriales (58.82%)
17 12449 bp 68.41 14.89 76.80
qs_4_scaffold_1197
Order: Halobacteriales (53.85%)
13 12263 bp 68.55 13.56 83.52
qs_4_scaffold_2594
Order: Halobacteriales (54.55%)
11 12026 bp 69.64 15.88 87.56
qs_4_scaffold_1346
Order: Halobacteriales (66.67%)
15 11599 bp 69.42 14.01 86.93
qs_4_scaffold_1301
Order: Halobacteriales (54.55%)
11 11344 bp 65.13 13.65 89.07
qs_4_scaffold_1306
Order: Halobacteriales (80%)
10 11270 bp 67.36 13.97 84.84
qs_4_scaffold_3156
Order: Halobacteriales (57.14%)
14 10643 bp 70.06 15.24 81.52
qs_4_scaffold_2307
Order: Halobacteriales (81.82%)
11 10617 bp 70.45 15.16 88.22
qs_4_scaffold_2220
Order: Halobacteriales (50%)
8 10487 bp 68.14 13.46 74.15
qs_4_scaffold_2628
Class: Halobacteria (66.67%)
9 10408 bp 67.74 12.42 75.95
qs_4_scaffold_2374
Order: Halobacteriales (75%)
12 10397 bp 70.07 18.13 80.73
qs_4_scaffold_1821
Order: Halobacteriales (50%)
6 10382 bp 65.48 13.46 92.50
qs_4_scaffold_1828
Class: Halobacteria (63.64%)
11 10351 bp 69.66 15.04 90.05
qs_4_scaffold_4264
Order: Halobacteriales (72.73%)
11 10347 bp 68.97 14.23 84.26
qs_4_scaffold_6427
Order: Halobacteriales (58.33%)
12 10345 bp 69.82 15.73 69.42
qs_4_scaffold_1740
Class: Halobacteria (63.64%)
11 10262 bp 69.21 13.80 89.69
qs_4_scaffold_2705
Class: Halobacteria (66.67%)
12 9979 bp 67.35 12.09 84.09
qs_4_scaffold_1506
Order: Halobacteriales (50%)
10 9868 bp 68.44 11.61 78.80
qs_4_scaffold_1509
Order: Halobacteriales (55.56%)
9 9854 bp 66.57 15.06 90.15
qs_4_scaffold_3165
Order: Halobacteriales (50%)
8 9845 bp 70.89 16.27 85.63
qs_4_scaffold_2643
Order: Halobacteriales (72.73%)
11 9830 bp 71.50 14.97 80.48
qs_4_scaffold_1712
Class: Halobacteria (75%)
8 9690 bp 70.17 16.06 83.37
qs_4_scaffold_1693
Order: Halobacteriales (54.55%)
11 9678 bp 67.85 12.72 84.28
qs_4_scaffold_3233
Order: Halobacteriales (50%)
10 9662 bp 68.68 14.04 88.03
qs_4_scaffold_1558
Class: Halobacteria (68.75%)
16 9605 bp 72.01 15.27 79.80
qs_4_scaffold_2548
Class: Halobacteria (70%)
10 9592 bp 69.76 13.78 81.66
qs_4_scaffold_4060
Order: Halobacteriales (75%)
12 9443 bp 69.81 15.60 85.08
qs_4_scaffold_3220
Order: Halobacteriales (60%)
10 9319 bp 70.11 13.56 89.40
qs_4_scaffold_2277
Order: Halobacteriales (71.43%)
7 9053 bp 67.37 12.54 80.89
qs_4_scaffold_2404
Class: Halobacteria (81.82%)
11 9004 bp 69.05 13.05 74.23
Displaying items 1-50 of 302 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.