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SW_12_Halobacteria_71_31

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.41 Longest contig: 36.91 Kbp Bin length: 947.95 Kbp GC content: 70.91 %
Contigs count: 115 Features count: 1056 rRNAs count: 0 tRNAs count: 16

Genome completeness

near complete RP 29 / 55 MC: 5 BSCG 22 / 51 MC: 1 ASCG 31 / 38 MC: 2
Displaying items 1-50 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
sw_12_scaffold_1693
Order: Halobacteriales (53.19%)
47 36911 bp 70.21 31.25 88.14
sw_12_scaffold_591
Class: Halobacteria (76.92%)
26 17326 bp 70.82 35.26 93.70
sw_12_scaffold_322
Class: Halobacteria (86.36%)
22 26358 bp 70.35 33.80 85.43
sw_12_scaffold_2299
Class: Halobacteria (76.19%)
21 17803 bp 70.92 28.77 87.17
sw_12_scaffold_1661
Class: Halobacteria (72.22%)
18 15094 bp 72.43 29.85 81.69
sw_12_scaffold_675
Class: Halobacteria (77.78%)
18 18195 bp 71.98 33.64 87.67
sw_12_scaffold_1878
Class: Halobacteria (77.78%)
18 15593 bp 71.04 27.83 82.54
sw_12_scaffold_1137
Order: Halobacteriales (52.94%)
17 14595 bp 70.57 30.55 73.65
sw_12_scaffold_294
Class: Halobacteria (75%)
16 17466 bp 70.00 32.69 82.58
sw_12_scaffold_2603
Order: Halobacteriales (50%)
16 14031 bp 69.42 28.52 92.92
sw_12_scaffold_2917
Order: Halobacteriales (73.33%)
15 13306 bp 69.27 31.78 85.41
sw_12_scaffold_785
Order: Halobacteriales (53.33%)
15 15406 bp 71.87 31.94 93.82
sw_12_scaffold_1873
Class: Halobacteria (80%)
15 15734 bp 70.52 29.76 79.11
sw_12_scaffold_757
Class: Halobacteria (92.86%)
14 14243 bp 70.04 30.88 89.95
sw_12_scaffold_2196
Class: Halobacteria (71.43%)
14 11378 bp 70.82 33.34 89.07
sw_12_scaffold_2765
Class: Halobacteria (85.71%)
14 13015 bp 69.83 29.74 84.16
sw_12_scaffold_1608
Order: Halobacteriales (53.85%)
13 10022 bp 73.14 29.88 81.20
sw_12_scaffold_1082
Order: Halobacteriales (61.54%)
13 15012 bp 70.41 31.45 85.43
sw_12_scaffold_1086
Class: Halobacteria (69.23%)
13 10884 bp 71.13 32.20 83.32
sw_12_scaffold_5545
Class: Halobacteria (69.23%)
13 9844 bp 68.59 28.93 68.87
sw_12_scaffold_3427
Class: Halobacteria (92.31%)
13 13063 bp 69.00 28.35 68.97
sw_12_scaffold_3706
Order: Halobacteriales (50%)
12 8456 bp 68.25 27.80 78.30
sw_12_scaffold_712
Class: Halobacteria (75%)
12 13134 bp 71.01 34.16 94.29
sw_12_scaffold_620
Order: Halobacteriales (50%)
12 8589 bp 70.66 30.68 86.34
sw_12_scaffold_667
Order: Halobacteriales (50%)
12 11996 bp 71.76 32.84 92.41
sw_12_scaffold_2487
Order: Halobacteriales (75%)
12 12024 bp 71.27 29.84 88.10
sw_12_scaffold_651
Order: Halobacteriales (50%)
12 8936 bp 71.74 32.11 94.17
sw_12_scaffold_1605
Class: Halobacteria (66.67%)
12 11483 bp 72.33 30.71 83.94
sw_12_scaffold_3483
Order: Halobacteriales (63.64%)
11 10147 bp 72.70 28.84 82.16
sw_12_scaffold_2391
Class: Halobacteria (90.91%)
11 9593 bp 71.04 30.12 87.19
sw_12_scaffold_1947
Class: Halobacteria (72.73%)
11 10476 bp 72.40 36.50 81.24
sw_12_scaffold_4014
Class: Halobacteria (72.73%)
11 8880 bp 68.63 31.46 89.22
sw_12_scaffold_2525
Class: Halobacteria (90.91%)
11 10285 bp 71.49 28.44 85.09
sw_12_scaffold_1008
Class: Halobacteria (90.91%)
11 10630 bp 71.76 32.62 88.05
sw_12_scaffold_4539
Class: Halobacteria (70%)
10 8722 bp 70.61 35.06 85.89
sw_12_scaffold_1612
Order: Halobacteriales (50%)
10 9372 bp 69.49 30.90 89.28
sw_12_scaffold_1293
Class: Halobacteria (90%)
10 9730 bp 72.00 33.44 77.37
sw_12_scaffold_668
Order: Halobacteriales (50%)
10 10364 bp 71.70 31.58 94.37
sw_12_scaffold_4845
Class: Halobacteria (80%)
10 8598 bp 71.32 32.74 84.26
sw_12_scaffold_3573
Order: Halobacteriales (50%)
10 11255 bp 72.57 33.25 88.15
sw_12_scaffold_2504
Order: Halobacteriales (50%)
10 9080 bp 72.18 34.87 88.98
sw_12_scaffold_1672
Class: Halobacteria (70%)
10 8206 bp 70.49 28.44 86.10
sw_12_scaffold_1442
Order: Halobacteriales (80%)
10 8282 bp 72.93 34.06 95.56
sw_12_scaffold_4494
Class: Halobacteria (60%)
10 7279 bp 71.03 34.85 78.72
sw_12_scaffold_1261
Order: Halobacteriales (50%)
10 12055 bp 71.04 35.69 90.76
sw_12_scaffold_5010
Class: Halobacteria (66.67%)
9 5430 bp 68.62 28.45 63.81
sw_12_scaffold_3218
Class: Halobacteria (100%)
9 5621 bp 71.00 30.14 93.67
sw_12_scaffold_7372
Class: Halobacteria (55.56%)
9 5305 bp 72.27 30.97 84.15
sw_12_scaffold_5782
Class: Halobacteria (77.78%)
9 8369 bp 71.20 31.21 90.48
sw_12_scaffold_3143
Class: Halobacteria (77.78%)
9 9814 bp 70.90 30.73 78.93
Displaying items 1-50 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.