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QC4_scaffold_245

Search features with annotation key words

Displaying items 31-56 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
QC4_scaffold_245_30
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(34598..35323)
-----------------
DNA (726bp)
protein (242aa)
2-haloalkanoic acid dehalogenase bin=GWC2_Elusimicrobia_51_8 species=Methanocaldococcus vulcanius genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
QC4_scaffold_245_31
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

comp(35421..36026)
-----------------
DNA (606bp)
protein (202aa)
Phosphate transport regulator related to PhoU Tax=Desulfomonile tiedjei DSM 6799 RepID=I4CBB0_9DELT bin=RBG9 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG9 organism_group=Chloroflexi
phosphate transport regulator related to PhoU
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
QC4_scaffold_245_32
CG_ACD39_01, ACD39, Bacteria

Not on your lists

comp(36234..37505)
-----------------
DNA (1272bp)
protein (424aa)
GTPase or GTP-binding protein-like protein; K06947 bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
GTP-binding protein
Tax=CG_ACD39_01
QC4_scaffold_245_33
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

comp(37521..37925)
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein bin=ACD39 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
Tax=BJP_IG2103_ACD39_50_23
QC4_scaffold_245_34
BJP_IG2102_Elusimicrobia_52_42, Elusimicrobia lineage II, Elusimicrobia, Bacteria

Not on your lists

comp(37915..38961)
-----------------
DNA (1047bp)
protein (349aa)
adenosine deaminase (EC:3.5.4.4)
hypothetical protein Tax=Saccharibacillus kuerlensis RepID=UPI00036307A3
Tax=BJP_IG2102_Elusimicrobia_52_42
QC4_scaffold_245_35
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

39073..39696
-----------------
DNA (624bp)
protein (208aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase bin=GWF2_Planctomycetes_42_9 species=Gemella morbillorum genus=Gemella taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=GWF2_Planctomycetes_42_9_curated
QC4_scaffold_245_36
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

39689..40402
-----------------
DNA (714bp)
protein (238aa)
Uracil-DNA glycosylase bin=GWB2_Elusimicrobium_63_22 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
uracil-DNA glycosylase
Tax=CG_Elusi_05
QC4_scaffold_245_37
unknown

Not on your lists

40354..40554
-----------------
DNA (201bp)
protein (67aa)

This feature has no annotations

QC4_scaffold_245_38
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40932..41213
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B719C2
cytoplasmic protein
Tax=BJP_IG2069_Desfulfarculales_53_13
QC4_scaffold_245_trna_1
unknown

Not on your lists

41227..41301
-----------------
DNA (75bp)
transferRNA Met
QC4_scaffold_245_39
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

comp(41320..42681)
-----------------
DNA (1362bp)
protein (454aa)
Putative transporter protein bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MFS transporter
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
QC4_scaffold_245_40
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(42734..44041)
-----------------
DNA (1308bp)
protein (436aa)
Transcription termination factor Rho bin=GWA2_Elusimicrobia_51_34 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
transcription termination factor
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_245_41
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(44559..46100)
-----------------
DNA (1542bp)
protein (514aa)
AMMECR1 domain protein bin=GWC2_Elusimicrobia_51_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
AMMECR1 domain-containing protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_245_trna_2
unknown

Not on your lists

comp(46327..46400)
-----------------
DNA (74bp)
transferRNA Pro
QC4_scaffold_245_42
GWA2_OP3X_41_15_curated, OP3X, Bacteria

Not on your lists

comp(46463..47695)
-----------------
DNA (1233bp)
protein (411aa)
Molybdopterin molybdochelatase bin=GWB2_CP_45_9 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
molybdopterin biosynthesis MoeA protein
Tax=GWA2_OP3X_41_15_curated
QC4_scaffold_245_43
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

47978..49717
-----------------
DNA (1740bp)
protein (580aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Integral membrane sensor signal transduction histidine kinase Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UWZ1_META3
Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
QC4_scaffold_245_44
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(49732..51024)
-----------------
DNA (1293bp)
protein (431aa)
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
QC4_scaffold_245_45
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(51028..52521)
-----------------
DNA (1494bp)
protein (498aa)
Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
QC4_scaffold_245_46

Not on your lists

comp(52518..52886)
-----------------
DNA (369bp)
protein (123aa)
Marine sediment metagenome DNA, contig: S06H3_S20770 {ECO:0000313|EMBL:GAI55832.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Two-component hybrid sensor and regulator bin=GWA2_Elusimicrobia_51_34 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
OmpR8; response regulator
QC4_scaffold_245_47
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(53103..56870)
-----------------
DNA (3768bp)
protein (1256aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_51_34 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
Tax=CG_Elusi_05
QC4_scaffold_245_48
unknown

Not on your lists

57017..57196
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

QC4_scaffold_245_49
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(57212..57586)
-----------------
DNA (375bp)
protein (125aa)
hypothetical protein Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00037357B3
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Tax=CG_Elusi_05
QC4_scaffold_245_50
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

comp(57656..58654)
-----------------
DNA (999bp)
protein (333aa)
Radical SAM domain protein Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDX9_DICT6
radical SAM domain protein
Radical SAM domain protein {ECO:0000313|EMBL:ACI18830.1}; species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12).;"
QC4_scaffold_245_51
Brachyspira hampsonii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(58795..60741)
-----------------
DNA (1947bp)
protein (649aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira hampsonii 30446.;"
Primosome assembly protein PriA Tax=Brachyspira hampsonii 30446 RepID=L0X5K6_9SPIR
primosomal protein N'
QC4_scaffold_245_52
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

comp(60769..62076)
-----------------
DNA (1308bp)
protein (436aa)
Citrate transporter bin=GWF2_Planctomycetes_42_9 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
citrate transporter
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
QC4_scaffold_245_53
Thermococcus sibiricus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

62772..62885
-----------------
DNA (114bp)
protein (38aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sibiricus (strain MM 739 / DSM 12597).;"
Metallophosphoesterase, calcineurin superfamily Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A4N6_THESM
Metallophosphoesterase, calcineurin superfamily
Displaying items 31-56 of 56 in total

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