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S15_scaffold_98_curated

Search features with annotation key words

Displaying items 1-30 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_98_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74..1318
DNA (1245bp) protein (415aa)
RuBisCo-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] id=5080880 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
RuBisCo-like protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1324..2691
DNA (1368bp) protein (456aa)
Hrp-dependent type III effector protein id=5080879 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Hrp-dependent type III effector protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2721..3440
DNA (720bp) protein (240aa)
transcriptional regulator NanR id=5080878 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
transcriptional regulator NanR rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_4

Not on your lists

comp(3450..4418)
DNA (969bp) protein (323aa)
LysR family transcriptional regulator n=1 Tax=uncultured bacterium RepID=U6C3I6_9BACT rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:BAO02597.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
LysR family transcriptional regulator rbh
S15_scaffold_98_curated_5
unknown

Not on your lists

4635..4955
DNA (321bp) protein (107aa)

This feature has no annotations

S15_scaffold_98_curated_6
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5114..5917
DNA (804bp) protein (268aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABD68750.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABD68750.1};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Enoyl-CoA hydratase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZQ3_RHOFD rbh
enoyl-CoA hydratase/isomerase rbh
S15_scaffold_98_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5925..7385)
DNA (1461bp) protein (487aa)
PAS/PAC sensor-containing diguanylate cyclase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1Q1_9BURK rbh
PAS/PAC sensor-containing diguanylate cyclase rbh
PAS/PAC sensor-containing diguanylate cyclase {ECO:0000313|EMBL:AFU45074.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_98_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7476..8087)
DNA (612bp) protein (204aa)
Uncharacterized protein id=1270533 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8190..8696
DNA (507bp) protein (169aa)
Cupin id=1270530 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8710..10206)
DNA (1497bp) protein (499aa)
Aldehyde dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B71_POLSJ rbh
aldehyde dehydrogenase rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABE44221.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S15_scaffold_98_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10266..11138)
DNA (873bp) protein (291aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60) rbh
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EIK90399.1}; EC=1.1.1.31 {ECO:0000313|EMBL:EIK90399.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
2-hydroxy-3-oxopropionate reductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MMF9_9BURK rbh
S15_scaffold_98_curated_12
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11183..11971)
DNA (789bp) protein (263aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-) rbh
2-dehydro-3-deoxyglucarate aldolase {ECO:0000313|EMBL:ABM93936.1}; EC=4.1.2.- {ECO:0000313|EMBL:ABM93936.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEE7_METPP rbh
S15_scaffold_98_curated_13
unknown

Not on your lists

comp(12180..12314)
DNA (135bp) protein (45aa)

This feature has no annotations

S15_scaffold_98_curated_14
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12350..12931)
DNA (582bp) protein (194aa)
LexA repressor n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T6T4_BURPP
LexA repressor
LexA repressor {ECO:0000313|EMBL:ACD18106.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
S15_scaffold_98_curated_15
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13050..16073
DNA (3024bp) protein (1008aa)
phosphohydrolase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B6CC96 rbh
HD-domain-containing protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
S15_scaffold_98_curated_16
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16070..17149
DNA (1080bp) protein (360aa)
Candidate Mandelate racemase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y299_RAMTT rbh
Mandelate racemase rbh
Candidate Mandelate racemase {ECO:0000313|EMBL:AEG91073.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
S15_scaffold_98_curated_17
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17157..18071)
DNA (915bp) protein (305aa)
Pirin-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220J8_RHOFD rbh
Pirin-like protein rbh
Pirin-like {ECO:0000313|EMBL:ABD68555.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S15_scaffold_98_curated_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18055..18462)
DNA (408bp) protein (136aa)
LysR family transcriptional regulator n=1 Tax=Leeia oryzae RepID=UPI00035FA320
DoxX family protein {ECO:0000313|EMBL:EHL21466.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
predicted membrane protein
S15_scaffold_98_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18541..19482
DNA (942bp) protein (314aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220J7_RHOFD rbh
LysR family transcriptional regulator rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
S15_scaffold_98_curated_20
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19607..19906)
DNA (300bp) protein (100aa)
id=5082232 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_98_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19991..20800
DNA (810bp) protein (270aa)
hypothetical protein id=5082158 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_98_curated_22
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20801..21451)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003614F21
Uncharacterized protein {ECO:0000313|EMBL:KDB54356.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
hypothetical protein
S15_scaffold_98_curated_23
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21464..22096)
DNA (633bp) protein (211aa)
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J3CP24_9BURK rbh
Glutathione S-transferase {ECO:0000313|EMBL:KGM39401.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
glutathione S-transferase domain-containing protein rbh
S15_scaffold_98_curated_24
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22101..22976)
DNA (876bp) protein (292aa)
Glutathione S-transferase {ECO:0000313|EMBL:CDS52965.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CDS52965.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Glutathione S-transferase, C-terminal domain n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VW20_POLNA rbh
glutathione S-transferase domain-containing protein rbh
S15_scaffold_98_curated_25
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23023..24021)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000376E812
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE43437.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S15_scaffold_98_curated_26
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24108..24950
DNA (843bp) protein (281aa)
ureidoglycolate lyase (EC:4.3.2.3) rbh
Ureidoglycolate lyase {ECO:0000313|EMBL:AEI82565.1}; EC=4.3.2.3 {ECO:0000313|EMBL:AEI82565.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
ureidoglycolate lyase n=1 Tax=Xanthobacteraceae RepID=UPI0003778A98 rbh
S15_scaffold_98_curated_27
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24979..25740
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. RPE64 RepID=R4WLB0_9BURK rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:BAN25229.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
S15_scaffold_98_curated_28
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25755..26939
DNA (1185bp) protein (395aa)
rhmD; L-rhamnonate dehydratase (EC:4.2.1.90)
L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288}; Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};; EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
L-rhamnonate dehydratase n=1 Tax=Pseudomonas luteola RepID=UPI0003102231 rbh
S15_scaffold_98_curated_29
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26985..28001
DNA (1017bp) protein (339aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC41442.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
TRAP dicarboxylate transporter, DctP subunit id=2919668 bin=GWA1_Treponema_62_8 species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
TRAP dicarboxylate transporter subunit DctP
S15_scaffold_98_curated_30
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28007..28525
DNA (519bp) protein (173aa)
Tripartite ATP-independent periplasmic transporter, DctQ component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12HD6_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:KKC41443.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
tripartite ATP-independent periplasmic transporter DctQ
Displaying items 1-30 of 139 in total

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