ggKbase | organisms

13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

13_1_20CM_3_Gemmatimonadetes_60_15

In projects: 13_1_20CM_3 | angelo_ncbi_2016 | gemmatimonadetes_ggkbase | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes → Bacteria

Metagenomic Context

Parent: 13_1_20cm_3_UNK

Properties

Avg. coverage: 14.51 Longest contig: 8.00 Kbp Bin length: 897.13 Kbp GC content: 60.28 %

Contigs count: 298 Features count: 1066 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 35 / 55 MC: 1 BSCG 30 / 51 ASCG 8 / 38 MC: 1

Displaying items 201-250 of 298 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_3_scaffold_192872 Species: Gemmatimonas aurantiaca (50%)	2	1998 bp	59.36	14.45	85.14
13_1_20cm_3_scaffold_92002 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1802 bp	58.32	13.37	100.06
13_1_20cm_3_scaffold_156704 Species: Gemmatimonas aurantiaca (50%)	2	2441 bp	61.25	14.19	96.11
13_1_20cm_3_scaffold_179756 Species: Saccharopolyspora erythraea (50%)	2	1344 bp	61.38	13.07	66.74
13_1_20cm_3_scaffold_231135 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1192 bp	61.91	11.58	91.61
13_1_20cm_3_scaffold_274223 Species: Gemmatimonas aurantiaca (50%)	2	1071 bp	61.72	12.42	99.72
13_1_20cm_3_scaffold_32592 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	2755 bp	61.27	15.85	89.07
13_1_20cm_3_scaffold_368883 Species: Gemmatimonas aurantiaca (100%)	2	1508 bp	62.60	13.15	100.27
13_1_20cm_3_scaffold_249116 Species: Cyclobacterium qasimii (50%)	2	1142 bp	60.42	16.48	97.72
13_1_20cm_3_scaffold_15235 Species: Gemmatimonas aurantiaca (100%)	2	3654 bp	60.10	15.73	97.78
13_1_20cm_3_scaffold_141753 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1496 bp	61.16	15.10	87.63
13_1_20cm_3_scaffold_98024 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	2712 bp	60.44	12.77	93.81
13_1_20cm_3_scaffold_143374 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1489 bp	62.32	11.46	61.45
13_1_20cm_3_scaffold_261341 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1107 bp	61.07	13.38	87.80
13_1_20cm_3_scaffold_100753 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1733 bp	59.78	15.79	100.06
13_1_20cm_3_scaffold_227474 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1202 bp	60.23	13.57	89.35
13_1_20cm_3_scaffold_309697 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1658 bp	62.79	12.26	86.13
13_1_20cm_3_scaffold_226565 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	2189 bp	61.49	16.05	100.05
13_1_20cm_3_scaffold_136711 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1520 bp	60.79	14.04	78.95
13_1_20cm_3_scaffold_182565 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1334 bp	60.27	16.18	96.25
13_1_20cm_3_scaffold_139252 Species: Gemmatimonas aurantiaca (50%)	2	2185 bp	61.14	15.16	100.09
13_1_20cm_3_scaffold_288324 Species: RBG_16_Ignavibacteria_36_9_curated (50%)	2	1034 bp	58.51	11.65	84.72
13_1_20cm_3_scaffold_68797 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2960 bp	60.37	16.28	97.91
13_1_20cm_3_scaffold_204465 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1267 bp	62.19	14.26	99.68
13_1_20cm_3_scaffold_220134 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1223 bp	62.80	12.52	89.04
13_1_20cm_3_scaffold_166202 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1394 bp	60.62	14.58	96.63
13_1_20cm_3_scaffold_220830 Species: Corallococcus coralloides (50%)	2	1221 bp	60.28	13.77	100.25
13_1_20cm_3_scaffold_195719 Species: Gemmatimonas aurantiaca (100%)	2	1293 bp	60.71	16.31	94.66
13_1_20cm_3_scaffold_111395 Species: Gemmatimonas aurantiaca (50%)	2	1660 bp	57.17	15.57	85.30
13_1_20cm_3_scaffold_84253 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	3118 bp	61.99	12.56	63.31
13_1_20cm_3_scaffold_49361 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2336 bp	59.08	13.86	94.01
13_1_20cm_3_scaffold_362955 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1838 bp	61.32	13.11	82.43
13_1_20cm_3_scaffold_139283 Species: Gemmatimonas aurantiaca (50%)	2	1507 bp	60.72	16.32	104.91
13_1_20cm_3_scaffold_88413 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2457 bp	60.36	15.53	96.09
13_1_20cm_3_scaffold_176160 Species: Dyella japonica (50%)	2	3181 bp	59.10	14.91	74.03
13_1_20cm_3_scaffold_107507 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1686 bp	62.75	12.36	100.00
13_1_20cm_3_scaffold_55947 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2221 bp	58.44	16.73	90.09
13_1_20cm_3_scaffold_198062 Species: Gemmatimonas aurantiaca (50%)	2	1286 bp	60.58	16.59	100.31
13_1_20cm_3_scaffold_39328 Species: Gemmatimonas aurantiaca (50%)	2	2557 bp	57.10	11.98	76.26
13_1_20cm_3_scaffold_166248 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1393 bp	63.32	17.30	99.93
13_1_20cm_3_scaffold_6886 Species: R_Gemmatimonadetes_71_11 (50%)	2	4841 bp	62.94	14.26	97.67
13_1_20cm_3_scaffold_105221 Species: Gemmatimonas aurantiaca (50%)	2	1702 bp	60.05	15.48	95.18
13_1_20cm_3_scaffold_205216 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1264 bp	60.76	12.51	98.02
13_1_20cm_3_scaffold_267657 Species: mine drainage metagenome (50%)	2	1941 bp	61.67	14.22	76.51
13_1_20cm_3_scaffold_288394 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1034 bp	63.35	15.05	100.39
13_1_20cm_3_scaffold_285169 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1043 bp	63.28	12.03	92.33
13_1_20cm_3_scaffold_274802 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1070 bp	60.09	14.07	100.37
13_1_20cm_3_scaffold_245548 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1152 bp	59.72	12.42	93.49
13_1_20cm_3_scaffold_205459 Species: Gemmatimonas aurantiaca (100%)	2	2314 bp	61.02	12.69	85.70
13_1_20cm_3_scaffold_34716 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2688 bp	63.28	13.73	99.78

Displaying items 201-250 of 298 in total

13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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