ggKbase home page

13_1_40cm_4_scaffold_8000_5

Organism: 13_1_40CM_4_Gemmatimonadetes_69_8

megabin RP 53 / 55 MC: 25 BSCG 48 / 51 MC: 24 ASCG 12 / 38 MC: 9
Location: 3554..4123

Top 3 Functional Annotations

Value Algorithm Source
ligT; 2'-5' RNA ligase (EC:6.5.1.-); K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=CG_Anaero_01 similarity UNIPROT
DB: UniProtKB
  • Identity: 40.8
  • Coverage: 184.0
  • Bit_score: 133
  • Evalue 4.40e-28
2'-5' RNA ligase n=1 Tax=uncultured prokaryote RepID=H5SIR3_9ZZZZ id=1245406 bin=RBG9 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi similarity UNIREF
DB: UNIREF100
  • Identity: 43.0
  • Coverage: 193.0
  • Bit_score: 136
  • Evalue 2.80e-29
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 44.8
  • Coverage: 183.0
  • Bit_score: 128
  • Evalue 2.80e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Anaero_01 → Anaerolineae → Chloroflexi → Bacteria

Sequences

DNA sequence
Length: 570
GTGAGGCTGTTCGTCGCGCTGAATCTCCCCCCCGCCGTCCGCGAGGCCGTCTGGGCGGCAGCGGCTCCGCTGCGTGAGCTCCAGCTGCCGGTGAACTGGGTGCGCGCCGACGGGGTGCACCTCACGCTCAAGTTCCTGGGTGAGGTTTCGGACGAGCAAGAGCCGGAGCTGCTCGCGGCGCTGGCGCAGGCCGCCGGGAGTGGGGAGGGCGCGTCGCGGGGCATTCCGCTCGCGCTGGGGGGGTTCGGCGTGTTCCCGGACCTGCGGCGACCGCGAGTGGTGTGGGTGGGGGTGGCCCCTGAGCCGGCCCTGGAGCTGTTGCAGCACCGGGTGGAGCAAGCGTTCGCGCCCCTGGGCTTCCCGACCGAGGGCCGGCCGTTCCGGCCCCACCTCACGCTGGGCCGGGCGGCACGGGATGCGGGGGCGCCGGCGTTCCGCGGCTTGGCGGAAGCCCTGGCCGGGCTCGAGTTCGCCGAGACGGCGCGGGTGGACTCGTTGGACCTGATGGAGAGCACGCTCCAAAGGGGCGGTGCGGTGTATCACGTCAGAAGGAGCGAGCGCCTTGATTAA
PROTEIN sequence
Length: 190
VRLFVALNLPPAVREAVWAAAAPLRELQLPVNWVRADGVHLTLKFLGEVSDEQEPELLAALAQAAGSGEGASRGIPLALGGFGVFPDLRRPRVVWVGVAPEPALELLQHRVEQAFAPLGFPTEGRPFRPHLTLGRAARDAGAPAFRGLAEALAGLEFAETARVDSLDLMESTLQRGGAVYHVRRSERLD*