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13_1_20cm_2_scaffold_4043_7

Organism: 13_1_20CM_2_Gemmatimonadetes_70_10

partial RP 20 / 55 BSCG 22 / 51 MC: 3 ASCG 8 / 38
Location: comp(5324..7126)

Top 3 Functional Annotations

Value Algorithm Source
msbA; lipid A export ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated UNIPROT
DB: UniProtKB
  • Identity: 55.8
  • Coverage: 599.0
  • Bit_score: 633
  • Evalue 4.30e-178
Lipid A export ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A621_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 48.1
  • Coverage: 595.0
  • Bit_score: 511
  • Evalue 1.30e-141
  • rbh
ABC transporter transmembrane region similarity KEGG
DB: KEGG
  • Identity: 49.0
  • Coverage: 598.0
  • Bit_score: 534
  • Evalue 3.20e-149

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Taxonomy

R_Gemmatimonadetes_71_11 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 1803
ATGGTGCGCGGCGCGCGGCTCGTCGCGCTGCTCCGCCCTTACACCTCGCTGTTCGTCGCCACCGTCGCCGCCACGGTGGTGTCGTCGGTGCTCGACGGCTTCACCTTCGTGCTGCTCATCCCGTTCCTGCGGTCGCTGTTCGGCGAGGCCGCCCTGCCGGCCCAGGGCGGCTCGCACGTCGAGGCGGTGCTCGACCGCATCGCGGGACCGTTCCTGCACGCCGGCGCCGCGGAGACCGCGCTGCGCAACGTCGTCATCGTGCTGCTCGTCGCGCTGGTCCTCAAGAACGTGACCGCCTTCGCCTCCTCGTATTGGAGCACGGTGATCCAGGAGAGCGTGGTGCGCGACCTGCGCGCGCGCCTGTTCCGCCACCTGCAAACGCTGCCGCTCGGCTACTTCCAGCGCACCAAGGCGGGGCAGACGGTCTCTCGCTTGATCAACGACACCGATCAGGTGAAGACGGCGGTGACCGCGGCCCTCGCCTCGCTGCTCCAGAACGCCGTGGTGATCGTCGTGTACGTGGTCATCTTGTTCGGGCTGTCGGCGCGGCTGACGCTGCTGGCCCTGGCGTTCGCGCCCGTGCTGTTGTTCATCGTGCGGCCGATGATCAGCCGCCTGCGGCGGCGTTCCCGCGAGCTGGTCGCCGAGCGCGGCGAGCTCACGAGCCACGTGAGCGAGATGGTGGCCTCGGTGAAGCTGATCCGCGCCTACGTCGCCGAAGCGTTCGAGCTGGAGCGCTTCAAGCGCCTCGCCGAGCGCTACCGCAAGCGCGTGCTGCGCGCGCAGCGCTTTTCGAGCCTCACCAGCCCGGTCACCGAGGTGTTCGGCGGCGTCATGATCGTGATGATCCTCTGGGTCGGCACGCGCCTGGCGCTCGGGGATCCCGCGGCGCTGCGGCCCGAGATGCTGATCACCTTCCTCGCCGTCGCGTTGCGTCTAATGTCGCCGGTCAAGTCGGTGTCGAACTACCCCGCCGTGATGGCGGGCGCGGCGGCATCGGCGGAGCGCGTCTTCGAGGTGCTCGACCTGCCCGCGGACGAGGGCGACCGGCCCGGCGAGACCACGGCGGTGTTCCGCGAGCGGTTCGAATACCGGCACGTGTCGTTCGCCTACGGCGAGGAAGCCGAGGTGCTGCGCGACGTGAGCCTCGCGGTGCGGCGCGGGCAGGTGGTCGCGATCGTGGGCCCGAGCGGGGCGGGGAAGACGACCCTCGTGGACCTGCTGCCGCGCTTCTACGAGCCGACGTCGGGCGAAATCCTCATGGACGACGTGCCGATCACGGGGTACACGCGGCGCTCGCTGCGCGCGCTGATGGGCATTGTGTCGCAGGAGACGGTGCTCCTCAACGACACCGTCTTCGCCAACGTCGCCTATGGGCGCAGCGACTTCACCCTCGAGCAGGTGCGCGCCGCGGCGCGGGCCGCGAACGCCGACGACTTCATCGCGCGGCTCCCCCAGGGCTACGACACTGTCCTCGGCGAGCGCGGCACGCGGCTCTCCGGCGGCCAGCGCCAGCGCATCGCGATCGCGCGCGCCGTGCTGCGCGACCCGCCGATCCTCATCCTCGACGAGGCCACCAGCCAGCTCGACACCGAGTCGGAGCGGCTCGTTCAGGACGCGATCGATCGCCTCATGCGGCACCGCACGGTGCTCGTGATCGCGCACCGGCTCGCGACCGTCCAGCACGCCGATCTGATCGTGGTGCTCGAGGACGGGCGCCTCGGGCAGCGTGGCACCCACCCCGAGCTGCTCGCCGCCGACGGCCTGTACCGCCGGCTCTACAACCTGCAGTTCCGGACCTGA
PROTEIN sequence
Length: 601
MVRGARLVALLRPYTSLFVATVAATVVSSVLDGFTFVLLIPFLRSLFGEAALPAQGGSHVEAVLDRIAGPFLHAGAAETALRNVVIVLLVALVLKNVTAFASSYWSTVIQESVVRDLRARLFRHLQTLPLGYFQRTKAGQTVSRLINDTDQVKTAVTAALASLLQNAVVIVVYVVILFGLSARLTLLALAFAPVLLFIVRPMISRLRRRSRELVAERGELTSHVSEMVASVKLIRAYVAEAFELERFKRLAERYRKRVLRAQRFSSLTSPVTEVFGGVMIVMILWVGTRLALGDPAALRPEMLITFLAVALRLMSPVKSVSNYPAVMAGAAASAERVFEVLDLPADEGDRPGETTAVFRERFEYRHVSFAYGEEAEVLRDVSLAVRRGQVVAIVGPSGAGKTTLVDLLPRFYEPTSGEILMDDVPITGYTRRSLRALMGIVSQETVLLNDTVFANVAYGRSDFTLEQVRAAARAANADDFIARLPQGYDTVLGERGTRLSGGQRQRIAIARAVLRDPPILILDEATSQLDTESERLVQDAIDRLMRHRTVLVIAHRLATVQHADLIVVLEDGRLGQRGTHPELLAADGLYRRLYNLQFRT*