ggKbase home page

13_1_40cm_3_scaffold_20754_3

Organism: 13_1_40CM_3_Gemmatimonadetes_70_6

partial RP 14 / 55 MC: 1 BSCG 14 / 51 ASCG 7 / 38
Location: 912..1493

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q9_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 48.7
  • Coverage: 187.0
  • Bit_score: 145
  • Evalue 6.20e-32
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 66.7
  • Coverage: 174.0
  • Bit_score: 219
  • Evalue 3.60e-54
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 185.0
  • Bit_score: 151
  • Evalue 1.90e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 582
ATGAAGCCTGAGCCGCCGTCCGCCCAACCTCCGGAGGGCCCCGCGCGTATAGAGGACGAGGCCGAGCTCGCGACGCGGGCCCGGGCCGGCGACCGCGCCGCCTTCGGGCGGCTGGTCGAGCGGTTCGCGCCCCAGGCGCGGCGCGTGGCGCGAGCGGTGCTGCAGGATCCGCACGACGCGGACGACGCGGCGCAGGACGCGTTTCTTGCGGCGCTGGTGAAGCTCGATCAGTACGATCCGCGCCGGCCGTTCGGGCCGTGGTTGATGCGGATCGTCGCGAACGCGGCGACCGACCGGCGCCGCCGCCGCACGGTGCGGCAGGTGGAACCGCTGGCCCCGGAGCTGACGGGCGGCGGGCCCCGGCCCGATCGCGAGGCCGAGCAGAGCGCGCTGGGGGACCGCCTGCGCGCCGCGCTCGCGGAGCTGCCTGAGCGGCGGCGCATCGCCGTGGTGCTGTTCGACGTGGAAGGCTATTCCCACGCCGAGATCGCGCAGATCCTCGGAATCCCCGAGGGCACCGTGCGCTCCGAAGTGTTTCACGCGCGCCGCCGGCTGCGCGAGCTCCTGGCGGACTGGAGATGA
PROTEIN sequence
Length: 194
MKPEPPSAQPPEGPARIEDEAELATRARAGDRAAFGRLVERFAPQARRVARAVLQDPHDADDAAQDAFLAALVKLDQYDPRRPFGPWLMRIVANAATDRRRRRTVRQVEPLAPELTGGGPRPDREAEQSALGDRLRAALAELPERRRIAVVLFDVEGYSHAEIAQILGIPEGTVRSEVFHARRRLRELLADWR*