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13_1_40cm_2_scaffold_138310_3

Organism: 13_1_40CM_2_Gemmatimonadetes_60_3

partial RP 40 / 55 MC: 4 BSCG 33 / 51 MC: 3 ASCG 8 / 38 MC: 2
Location: comp(972..1442)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB78_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 70.5
  • Coverage: 156.0
  • Bit_score: 223
  • Evalue 1.10e-55
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 71.8
  • Coverage: 156.0
  • Bit_score: 230
  • Evalue 1.70e-57
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 70.5
  • Coverage: 156.0
  • Bit_score: 223
  • Evalue 3.10e-56

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Taxonomy

RBG_16_Gemmatimonadetes_66_8_curated → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 471
ATGGTGCGCGATCGCGCGCTCGCCGAGGATCTCGCGCAGGAAACGTTCATCAAAGTCCTGAACGGGATCAAATCGTACCGGCCGGAGTTCAAGTTCTCATCCTGGATTTTCAAAATTGCGAACAACGCCGCGATCGATCATCTGCGGCGCAAGAGCATCGATACACTGTCCCTCGATGGCGCACCCAGCGCCGAGACCCCCGAGCAGATGCGCGCGACGTCGCTGCAATTGGGCGACCGCACCGAGAGTCCGCTCGACGAAGTGGAGAACCGCGAGCTCGGCACGGCGATCGAGCGGGCCATCGCCCGGCTCCGTCCGGAGTACCGGTCCTGCGTCCTGCTGCGGCACGTGGAGGGGTATTCCTACGAGGAAATCGCTGATACGCTGGAGCTGCCCCTGGGAACGGTGAAAACCTATATCCATCGGGCCCGTAATGAATTGCGTGGTTATCTGGAAGATCGCCGGGAGTGA
PROTEIN sequence
Length: 157
MVRDRALAEDLAQETFIKVLNGIKSYRPEFKFSSWIFKIANNAAIDHLRRKSIDTLSLDGAPSAETPEQMRATSLQLGDRTESPLDEVENRELGTAIERAIARLRPEYRSCVLLRHVEGYSYEEIADTLELPLGTVKTYIHRARNELRGYLEDRRE*