ggKbase home page
Advanced Search
Search Help

13_1_40CM_2_Gemmatimonadetes_60_3

In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  gemmatimonadetes_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 2.82 Longest contig: 8.80 Kbp Bin length: 1.97 Mbp GC content: 59.98 %
Contigs count: 1121 Features count: 2468 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 40 / 55 MC: 4 BSCG 33 / 51 MC: 3 ASCG 8 / 38 MC: 2
Displaying items 451-500 of 1121 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_277941
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1149 bp 59.62 2.48 96.34
13_1_40cm_2_scaffold_242985
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1722 bp 59.87 1.92 69.57
13_1_40cm_2_scaffold_186768
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1402 bp 58.35 2.57 98.43
13_1_40cm_2_scaffold_131947
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1661 bp 62.37 2.62 44.07
13_1_40cm_2_scaffold_184233
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1411 bp 60.31 2.55 95.68
13_1_40cm_2_scaffold_130881
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1668 bp 61.69 2.43 91.01
13_1_40cm_2_scaffold_560473
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1307 bp 61.82 3.44 67.71
13_1_40cm_2_scaffold_125309
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1705 bp 60.06 3.17 100.12
13_1_40cm_2_scaffold_272852
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1160 bp 60.60 1.03 94.40
13_1_40cm_2_scaffold_149112
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1563 bp 58.29 2.88 100.19
13_1_40cm_2_scaffold_60153
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 2425 bp 60.45 3.34 98.35
13_1_40cm_2_scaffold_587825
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1279 bp 62.31 2.46 87.26
13_1_40cm_2_scaffold_288333
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1129 bp 58.19 3.06 101.51
13_1_40cm_2_scaffold_479159
Species: R_Gemmatimonadetes_71_11 (100%)
2 1131 bp 60.39 2.52 99.73
13_1_40cm_2_scaffold_263976
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1179 bp 57.59 3.31 92.62
13_1_40cm_2_scaffold_623056
Species: R_Gemmatimonadetes_71_11 (50%)
2 1428 bp 58.19 2.31 62.40
13_1_40cm_2_scaffold_41543
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (50%)
2 2871 bp 61.93 3.76 60.08
13_1_40cm_2_scaffold_458948
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1397 bp 59.70 4.55 80.96
13_1_40cm_2_scaffold_314830
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1079 bp 62.00 1.81 99.81
13_1_40cm_2_scaffold_335799
Species: RHI_Gammaproteobacteria_63_22 (50%)
2 1040 bp 60.29 3.75 77.60
13_1_40cm_2_scaffold_219173
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1952 bp 62.35 4.46 92.37
13_1_40cm_2_scaffold_179314
Species: R_Acidobacteria_65_29 (50%)
2 1429 bp 60.88 2.20 93.21
13_1_40cm_2_scaffold_144105
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1948 bp 59.86 3.39 87.78
13_1_40cm_2_scaffold_336996
Species: Gemmatimonas aurantiaca (50%)
2 1038 bp 60.98 2.02 79.77
13_1_40cm_2_scaffold_342733
Species: RBG_13_Caldithrix_44_9_curated (50%)
2 1025 bp 57.66 3.22 89.85
13_1_40cm_2_scaffold_295523
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1115 bp 60.36 1.48 106.82
13_1_40cm_2_scaffold_90783
Species: GWA2_Ignavibacteria_54_16_curated (50%)
2 1998 bp 59.01 2.03 100.15
13_1_40cm_2_scaffold_348056
Species: Gemmatimonas aurantiaca (100%)
2 1014 bp 62.03 2.66 99.41
13_1_40cm_2_scaffold_129767
Species: Gemmatimonas aurantiaca (50%)
2 1676 bp 59.13 1.79 100.06
13_1_40cm_2_scaffold_264442
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1178 bp 62.14 1.66 78.69
13_1_40cm_2_scaffold_343197
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1024 bp 58.89 1.76 84.96
13_1_40cm_2_scaffold_29917
Species: Gemmatimonas aurantiaca (50%)
2 3319 bp 60.80 3.25 95.72
13_1_40cm_2_scaffold_90786
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1998 bp 59.11 3.30 100.15
13_1_40cm_2_scaffold_327674
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1736 bp 59.39 1.90 100.92
13_1_40cm_2_scaffold_48913
Species: R_Acidobacteria_65_29 (50%)
2 2669 bp 61.48 2.47 83.63
13_1_40cm_2_scaffold_302272
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1103 bp 57.75 2.04 72.35
13_1_40cm_2_scaffold_32460
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 3205 bp 57.82 3.00 90.05
13_1_40cm_2_scaffold_249404
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 1214 bp 58.65 1.98 87.48
13_1_40cm_2_scaffold_291756
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (100%)
2 1122 bp 58.73 1.87 94.38
13_1_40cm_2_scaffold_256526
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1196 bp 61.20 1.88 93.06
13_1_40cm_2_scaffold_125551
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1704 bp 60.50 2.20 98.59
13_1_40cm_2_scaffold_295004
Species: R_Burkholderiales_57_36 (50%)
2 1116 bp 60.93 3.90 51.61
13_1_40cm_2_scaffold_208396
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1329 bp 58.31 2.14 98.87
13_1_40cm_2_scaffold_584863
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1338 bp 57.77 2.47 54.04
13_1_40cm_2_scaffold_241784
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1233 bp 59.45 2.55 96.84
13_1_40cm_2_scaffold_167221
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1478 bp 59.68 2.64 100.07
13_1_40cm_2_scaffold_152555
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1546 bp 61.64 4.75 89.26
13_1_40cm_2_scaffold_298256
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1110 bp 62.25 2.30 97.57
13_1_40cm_2_scaffold_142966
Species: uncultured bacterium (50%)
2 1596 bp 59.40 4.04 55.83
13_1_40cm_2_scaffold_343205
Species: R_Acidobacteria_65_29 (50%)
2 1592 bp 61.18 4.75 51.44
Displaying items 451-500 of 1121 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.