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ACD25_89

Alias: ACD25_26562.4755.6

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_89_1

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comp(437..577)
DNA (141bp) protein (47aa)
437..577 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD95020.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD25_89_2
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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1083..2012
DNA (930bp) protein (310aa)
rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=299 to=309)
seg (db=Seg db_id=seg from=246 to=294)
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=161 to=185 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_89_3

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2032..2493
DNA (462bp) protein (154aa)
hypothetical protein
EF_TS_1 (db=PatternScan db_id=PS01126 from=11 to=26 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=6 to=128 evalue=1.2e-32 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=53 to=152 evalue=1.5e-26 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD25_89_4
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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2529..3077
DNA (549bp) protein (183aa)
hypothetical protein
seg (db=Seg db_id=seg from=154 to=165)
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=15 to=182 evalue=4.7e-56 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=15 to=182 evalue=4.7e-56 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
ACD25_89_5

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3318..4280
DNA (963bp) protein (321aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=315)
seg (db=Seg db_id=seg from=137 to=150)
ACD25_89_6
GWD2_WWE3_42_34, WWE3, Bacteria

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4588..4779
DNA (192bp) protein (64aa)
seg (db=Seg db_id=seg from=50 to=62)
Ribosomal_S21 (db=HMMPfam db_id=PF01165 from=3 to=56 evalue=1.6e-19 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S21p: ribosomal protein S21 (db=HMMTigr db_id=TIGR00030 from=2 to=58 evalue=1.6e-16 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMALS21 (db=FPrintScan db_id=PR00976 from=5 to=13 evalue=1.1e-08 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 6 items

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