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ACD11_38_5

Organism: ACD11

near complete RP 50 / 55 MC: 11 BSCG 47 / 51 MC: 2 ASCG 0 / 38
Location: comp(5496..6086)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 46.0
  • Coverage: 176.0
  • Bit_score: 161
  • Evalue 3.10e-37
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=58 to=89 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=30 to=193 evalue=9.5e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 9.50e-39

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 591
ATGAGTGAAAGATTTTTCGGGAAAGATTCTCAAGACTTGCAAAACAAAACTGACGAAGAATTAGTCGGAGTTGTTTTGTCTAACCCCGATTACTATGAGATTCTTATGAGCAGATACGAAGATAAACTTAGGCGGTATATTATGCGAATTTCTTCCGTTACCAAAGAAGACGCCGAGGATGTGTTGCAAGATGTTTTCATAAGCGCTTATAAAAATTTAAACGGTTTTGACAGGGATTTGAAGTTTTCTTCTTGGATATATCGAATTACCCATAACAAAGTCATAAGCAGTTTCAGAAAAAAAGAAGCGCGACCAAAAACAATTACCTATGAAGGAGATAATGATTTGTTGAATATTTTGCAAGGCGATGATGATTTGGCTCGCGAGTTGGAAAAGGGCTGCACCGCCAAGCAAGTTTCGGAAATATTGTCTCGAATGGACGAGCGATATCGAGAAGCGTTGATTCTTCGATTCATTGAAGATAAAAATTATCAAGAGATTTCCGATATTTTGCAAAAACCGATGGGAACGGTGGCGACGTTGATTAATAGGGCTAAAAAACAATTCAAAGAAAGATTTGTTGAAAAATAA
PROTEIN sequence
Length: 197
MSERFFGKDSQDLQNKTDEELVGVVLSNPDYYEILMSRYEDKLRRYIMRISSVTKEDAEDVLQDVFISAYKNLNGFDRDLKFSSWIYRITHNKVISSFRKKEARPKTITYEGDNDLLNILQGDDDLARELEKGCTAKQVSEILSRMDERYREALILRFIEDKNYQEISDILQKPMGTVATLINRAKKQFKERFVEK*