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ACD2_22

Alias: ACD2_1308.61489.60

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_22_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(117..638)
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
ACD2_22_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(793..1737)
DNA (945bp) protein (315aa)
seg (db=Seg db_id=seg from=275 to=286)
seg (db=Seg db_id=seg from=60 to=74)
seg 60..74 Tax=ACD2
ACD2_22_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(1750..2001)
DNA (252bp) protein (84aa)
1750..2001 - (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_22_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2067..4634)
DNA (2568bp) protein (856aa)
coiled-coil (db=Coil db_id=coil from=548 to=569 evalue=NA)
seg (db=Seg db_id=seg from=275 to=291)
seg (db=Seg db_id=seg from=439 to=450)
coiled-coil 548..569 Tax=ACD2
ACD2_22_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(4644..6269)
DNA (1626bp) protein (542aa)
seg (db=Seg db_id=seg from=138 to=157)
seg (db=Seg db_id=seg from=210 to=234)
coiled-coil (db=Coil db_id=coil from=21 to=42 evalue=NA)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=83 to=504 evalue=7.0e-21 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ACD2_22_6
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(6277..7743)
DNA (1467bp) protein (489aa)
seg (db=Seg db_id=seg from=72 to=87)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=102 to=488 evalue=6.1e-16 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=219 to=483 evalue=1.8e-08 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=78 to=484 evalue=2.5e-06)
ACD2_22_7
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(7745..8953)
DNA (1209bp) protein (403aa)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=33 to=364 evalue=8.8e-14 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=196 to=370 evalue=4.3e-08 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANK_REPEAT (db=ProfileScan db_id=PS50088 from=324 to=356 evalue=9.137 interpro_id=IPR002110 interpro_description=Ankyrin repeat)
ANK_REP_REGION (db=ProfileScan db_id=PS50297 from=310 to=356 evalue=9.41 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ACD2_22_8
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(8964..10433)
DNA (1470bp) protein (490aa)
hypothetical protein MPER_12988 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187F610 (db=UNIREF evalue=6.0e-12 bit_score=75.9 identity=24.72 coverage=69.5918367346939)
hypothetical protein (db=KEGG evalue=6.0e-12 bit_score=75.9 identity=24.72 coverage=69.5918367346939)
seg (db=Seg db_id=seg from=368 to=379)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=69 to=324 evalue=4.7e-27 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ACD2_22_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(10436..11917)
DNA (1482bp) protein (494aa)
similar to ankyrin 2,3/unc44 (db=KEGG evalue=2.0e-12 bit_score=78.2 identity=27.54 coverage=58.7044534412955)
seg (db=Seg db_id=seg from=225 to=240)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=124 to=434 evalue=1.9e-28 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=110 to=433 evalue=8.2e-24)
ACD2_22_10
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(11919..12773)
DNA (855bp) protein (285aa)
ankyrin repeat domain protein (db=KEGG evalue=1.0e-12 bit_score=77.0 identity=31.41 coverage=65.6140350877193)
coiled-coil (db=Coil db_id=coil from=17 to=38 evalue=NA)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=74 to=272 evalue=4.7e-25 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=96 to=281 evalue=8.5e-20 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ACD2_22_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(12775..14202)
DNA (1428bp) protein (476aa)
Pfs, NACHT and Ankyrin domain protein (db=KEGG evalue=1.0e-11 bit_score=75.1 identity=26.87 coverage=58.8235294117647)
Pfs, NACHT and Ankyrin domain protein n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8NYR4_ASPFN (db=UNIREF evalue=1.0e-11 bit_score=75.1 identity=26.87 coverage=58.8235294117647)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=126 to=420 evalue=6.4e-26 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=130 to=422 evalue=7.6e-26 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ACD2_22_12
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(14211..15599)
DNA (1389bp) protein (463aa)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=73 to=454 evalue=1.1e-17 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=108 to=460 evalue=3.3e-11 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=56 to=456 evalue=4.3e-05)
no description (db=HMMSmart db_id=SM00248 from=392 to=423 evalue=0.64 interpro_id=IPR002110 interpro_description=Ankyrin repeat)
ACD2_22_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(15601..16965)
DNA (1365bp) protein (455aa)
seg (db=Seg db_id=seg from=349 to=368)
seg 349..368 Tax=ACD2
ACD2_22_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(16965..17936)
DNA (972bp) protein (324aa)
seg (db=Seg db_id=seg from=210 to=222)
seg (db=Seg db_id=seg from=63 to=79)
seg 63..79 Tax=ACD2
ACD2_22_15
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(17942..19345)
DNA (1404bp) protein (468aa)
17942..19345 - (rbs_motif=TAA rbs_spacer=3bp)
hypothetical protein Tax=ACD2
ACD2_22_16
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(19349..20818)
DNA (1470bp) protein (490aa)
seg (db=Seg db_id=seg from=318 to=331)
seg 318..331 Tax=ACD2
ACD2_22_17
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(20825..24925)
DNA (4101bp) protein (1367aa)
coiled-coil (db=Coil db_id=coil from=781 to=802 evalue=NA)
seg (db=Seg db_id=seg from=8 to=20)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=271 to=489 evalue=4.4e-12)
coiled-coil 781..802 Tax=ACD2
ACD2_22_18
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(24980..25411)
DNA (432bp) protein (144aa)
24980..25411 - (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD2
ACD2_22_19
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(25526..26173)
DNA (648bp) protein (216aa)
phosphohydrolase
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=28 to=211 evalue=6.2e-11)
no description (db=Gene3D db_id=G3DSA:1.10.3210.10 from=18 to=212 evalue=2.9e-10)
HD superfamily hydrolase; K07023 putative hydrolases of HD superfamily alias=ACD2_C00022G00019,ACD2_1308.61489.60_19,ACD2_1308.61489.60G0019 id=34794 tax=ACD2 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD2_22_20

Not on your lists

26450..28567
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWK0_STRM9 (db=UNIREF evalue=0.0 bit_score=869.0 identity=61.29 coverage=96.8838526912181)
translation elongation factor G
translation elongation factor G
translation elongation factor G
ACD2_22_21
ACD2, Gracilibacteria, Bacteria

Not on your lists

29724..29999
DNA (276bp) protein (92aa)
29724..29999 + (rbs_motif=TAAAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
ACD2_22_22
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(30386..31528)
DNA (1143bp) protein (381aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
seg (db=Seg db_id=seg from=76 to=89)
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=9 to=380 evalue=5.2e-61 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
no description (db=HMMSmart db_id=SM00480 from=25 to=376 evalue=3.2e-58 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD2_22_23
ACD2, Gracilibacteria, Bacteria

Not on your lists

31675..31896
DNA (222bp) protein (74aa)
Nudix (db=superfamily db_id=SSF55811 from=5 to=63 evalue=2.3e-07 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=10 to=63 evalue=3.7e-06 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=5 to=63 evalue=0.00014 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix 5..63 Tax=ACD2
ACD2_22_24
ACD2, Gracilibacteria, Bacteria

Not on your lists

32250..32705
DNA (456bp) protein (152aa)
32250..32705 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
ACD2_22_25
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(32767..33558)
DNA (792bp) protein (264aa)
seg (db=Seg db_id=seg from=226 to=238)
seg (db=Seg db_id=seg from=183 to=196)
seg (db=Seg db_id=seg from=24 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
ACD2_22_26
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(33661..34893)
DNA (1233bp) protein (411aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD2
ACD2_22_27
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(34913..36568)
DNA (1656bp) protein (552aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=523 to=551 evalue=NA)
seg (db=Seg db_id=seg from=533 to=549)
hypothetical protein alias=ACD2_C00022G00027,ACD2_1308.61489.60G0027,ACD2_1308.61489.60_27 id=34762 tax=ACD2 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5
ACD2_22_28
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(36960..37262)
DNA (303bp) protein (101aa)
HxlR family transcriptional regulator (db=KEGG evalue=3.0e-13 bit_score=77.0 identity=42.11 coverage=92.0792079207921)
HxlR (db=HMMPfam db_id=PF01638 from=13 to=98 evalue=1.8e-17 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=98 evalue=1.7e-15)
HTH_HXLR (db=ProfileScan db_id=PS51118 from=5 to=100 evalue=21.701 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
ACD2_22_29
ACD2, Gracilibacteria, Bacteria

Not on your lists

37352..37963
DNA (612bp) protein (204aa)
acyl carrier protein phosphodiesterase
no description (db=Gene3D db_id=G3DSA:3.40.50.360 from=2 to=202 evalue=1.3e-30)
Flavoproteins (db=superfamily db_id=SSF52218 from=1 to=203 evalue=2.5e-30)
Flavodoxin_2 (db=HMMPfam db_id=PF02525 from=1 to=187 evalue=3.0e-25 interpro_id=IPR003680 interpro_description=Flavodoxin-like fold GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: coenzyme binding (GO:0050662))
ACD2_22_30
ACD2, Gracilibacteria, Bacteria

Not on your lists

37985..38182
DNA (198bp) protein (66aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=6.0)
PROKAR_LIPOPROTEIN Tax=ACD2
Displaying items 1-30 of 51 in total

View Taxonomy