ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

RifSed_csp2_19ft_3_scaffold_17811_15

Organism: RifSed_csp2_19ft_3_Abawaca2_18

near complete RP 39 / 55 MC: 2 BSCG 44 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(8368..9231)

Top 3 Functional Annotations

Value Algorithm Source
formamidopyrimidine-DNA glycosylase (EC:4.2.99.18 3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] id=6211 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11 similarity UNIREF
DB: UNIREF100
  • Identity: 61.2
  • Coverage: 289.0
  • Bit_score: 361
  • Evalue 6.20e-97
mutM; formamidopyrimidine-DNA glycosidase (EC:3.2.2.23 4.2.99.18) similarity KEGG
DB: KEGG
  • Identity: 36.9
  • Coverage: 293.0
  • Bit_score: 198
  • Evalue 2.00e-48
Tax=RBG_16_RIF_OP11_02_41_13_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 287.0
  • Bit_score: 578
  • Evalue 3.50e-162

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_OP11_02_41_13_curated → RIF-OP11-2 → Microgenomates → Bacteria

Sequences

DNA sequence
Length: 864
TTGCCAGAAGTAGAAAGTATTAAGTTACAGCTCCAGAAATATCTGGTGGGACATAAAATAATTAATATCGAAATCCGAAATCCGAAATACGAACTAGAGAAAGATAAAGTTCTAAACGCTAAAATCAAAAGTATTCGCCGTTTTGCAAAAGTACTAGCGATTGATCTTTCGAGTGGATACTCGATCGTAATTCATATAAAGCTGACTGGACAACTCATTTATCGAGGCCCGAATTTACCTAAAGTTTCAACCATATCCCAAAAAGTGACGGGTGGAGTTCCAGGCAAGCACACTCACGTAATTTTTAAGCTAGATGATGGCGGCTTTTTGTACTATAACGACGTGCGGCGGTTTGGCTGGATAAAAGTCATCAAAACTGCCGAGGTGGAAACGTCTGGTTTTGTAGGCAAGCTTGGCCCGGAGCCTTTCGGCTCCGCTCAGGGTAAACCTTTTACTTATGAGTATTTTCAGGGAGTTTTGGCAAAAACAAAAAGAGCTGTCAAAGTGGTGTTAATGGATCAGTCCAAAATGGGTGGGGTAGGCAATATTTATGCTAACGACGCGCTCTGGTTGGCAGGAATAAACCCTAAAAAAGAAAGTAAGAAATTAGGAAACGAGGAAATAAAGAAGTTATATGGTGCAATACACCAAGTTTTGAAAGAGGGGGTAAAGTACGGAGGTGCGAGTGAGTTAGCTTTTGTGACTCCCGACGGTCAAGAAGGGAGTTACCAAAATTACACATTGGCTTATGGAAAAGAAGGCACGCTATGTCCGCGACCTGCCTGCCGACAGATAGGTGTAAAATTTACCAAGTATTTCCTCTCCGGCCGCGGTACGTATGTTTGCCCTAATTGCCAAGTCTGA
PROTEIN sequence
Length: 288
LPEVESIKLQLQKYLVGHKIINIEIRNPKYELEKDKVLNAKIKSIRRFAKVLAIDLSSGYSIVIHIKLTGQLIYRGPNLPKVSTISQKVTGGVPGKHTHVIFKLDDGGFLYYNDVRRFGWIKVIKTAEVETSGFVGKLGPEPFGSAQGKPFTYEYFQGVLAKTKRAVKVVLMDQSKMGGVGNIYANDALWLAGINPKKESKKLGNEEIKKLYGAIHQVLKEGVKYGGASELAFVTPDGQEGSYQNYTLAYGKEGTLCPRPACRQIGVKFTKYFLSGRGTYVCPNCQV*