ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

GWB1_scaffold_3503_2

Organism: GWB1_OD1_56_8

partial RP 34 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 8 / 38
Location: comp(507..2192)

Top 3 Functional Annotations

Value Algorithm Source
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_01_FULL_OD1_56_20_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 561.0
  • Bit_score: 1080
  • Evalue 0.0
type IV-A pilus assembly ATPase PilB KEGG
DB: KEGG
  • Identity: 37.1
  • Coverage: 563.0
  • Bit_score: 362
  • Evalue 2.60e-97
Putative type II secretion system protein E similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 413
  • Evalue 9.00e+00

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_OD1_56_20 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 1686
ATGCCCCAGAACGCAACGTCCAACGAAACGCCGATCGAGAAAAAGCTCGTTCAGATCAGGCGCGAAGGCGAGGAGCGGGACACAGAACGCCGCGCGAGCCGCAGCGGTTTTCCGTACGTGAACCTGCGAAGGACGCCTGTTTCTCTTGAAGCGGTCAAGCTCGTTCCCGAGGCACAGGCCAGGGAAGCCGGAGTGGTCGCCCTGGAAATAAAGCCCGGAAAAGCTGCGCTCGCCGCGCGCGACCCGAAATCAGCCGCTACTAAAAAAATCGTCCGGGACCTCGAAGAGAAGAAATACGAAGTAAAGCTCTTTATGGCCTCGCCCTCTAGCCTCGAAGAGGCGTGGCGGTTTTATAAATTCGTTGCCGGGGAGCTCAAAGAGATCACCGGGAAAGTAGGCATCGAGCAGAAGCAGCTCGAAGAGTTTCTCGGACGCCTCAAGAGCTTTCAGGCGGTTCGCGACGCACTCCAGAAATTCGATTTTTCCAAAACATCCGTCACCGCCCTCCTCGAGATCGTCCTCGCGGGTGCCCTTGCGAACGGCGCGTCAGATATTCACTTTGAAGCCGAAGAGGAGCACGCGAAGATACGTTTTCGTCTCGACGGCATCCTGCAGGACGCGTTCGGTAATTTGCCGGCCCACAACTACGAAGGCCTCGTGTCGCGGATCAAGCTCTTATCCGGGTTGAAGATCAACATCCGCGGCGAACCGCAGGACGGGAGGTTTACCATCGACCTTCAAAAGAAAGAGATCGAGGTCCGCGTGTCGATTATTCCTTCGGAGTTCGGCGAGACCATCGTGATGAGGATCTTGGACCCCGAGACGATCCAGATCGATCTCTCGGGCCTCGGGATCCGCGAGGACGACCTCGCGATCGTCGAGCGGGAGCTCCTTAAGCCGAACGGGCTCATTTTAAACACCGGGCCAACCGGCTCCGGGAAGACCACGACCCTCTACGCGTTTCTCAGGAGGATCGTGAGCTCGGAGATAAAAATCATCACCATAGAAGACCCGATAGAATATCGGATAGAAGGGGTTGAGCAGACGCAGGTGGACCCGGACGTCGGCTACAGCTTTGCCGGCGGATTGCGGGCCATTCTGCGGCAAGACCCTGATGCGATCCTCGTGGGGGAGATACGCGATAAAGAGACCGCAGACATCGCGATGCAGGCCTCTCTCACGGGCCACCTGGTGTTCTCCACGCTTCACACGAACGACGCGATCGGGGCGGTTCCCCGCCTGATCGATCTGGGAGTGAAAGCGGCGACCGTTGGCCCGGCCCTCAGCCTCGTGATCGCCCAGCGGCTCGTGCGCAAGCTATGCCGGGAGTGCAGAAAAGCGGCTGCGGGAGAAACCGAACTCGGGCGCAAAATAGAGAACTTCATAAAAAAGCTTCCCCGCCGCGTACGGCGCGACGCGTATAAAAAGACAGCTGTTTACGCCGCGGGTGGATGCGTGAAATGCAACGGATCGGGATATAAAGGTCGACTCGGCATCTTCGAATTTCTTGTCGCCGGGCCAGAACTCGAGGCGGTCATACTGGAGGAAGCGTCCGAGGTGGCGCTGCGGCGGCTCGCCGAGAAACAGGAAATGGTCACGATGCAGGAGGACGGAATTTTGAAAGTGCTCCAAGGGGAGACGAGTTTTGACGAGGTCGAGAAGATCACGGGACCGATATCCTGGTAA
PROTEIN sequence
Length: 562
MPQNATSNETPIEKKLVQIRREGEERDTERRASRSGFPYVNLRRTPVSLEAVKLVPEAQAREAGVVALEIKPGKAALAARDPKSAATKKIVRDLEEKKYEVKLFMASPSSLEEAWRFYKFVAGELKEITGKVGIEQKQLEEFLGRLKSFQAVRDALQKFDFSKTSVTALLEIVLAGALANGASDIHFEAEEEHAKIRFRLDGILQDAFGNLPAHNYEGLVSRIKLLSGLKINIRGEPQDGRFTIDLQKKEIEVRVSIIPSEFGETIVMRILDPETIQIDLSGLGIREDDLAIVERELLKPNGLILNTGPTGSGKTTTLYAFLRRIVSSEIKIITIEDPIEYRIEGVEQTQVDPDVGYSFAGGLRAILRQDPDAILVGEIRDKETADIAMQASLTGHLVFSTLHTNDAIGAVPRLIDLGVKAATVGPALSLVIAQRLVRKLCRECRKAAAGETELGRKIENFIKKLPRRVRRDAYKKTAVYAAGGCVKCNGSGYKGRLGIFEFLVAGPELEAVILEEASEVALRRLAEKQEMVTMQEDGILKVLQGETSFDEVEKITGPISW*