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ACD13_4

Alias: ACD13_48235.49035.20

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Displaying items 31-55 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_4_31

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24506..25153
DNA (648bp) protein (216aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
seg (db=Seg db_id=seg from=35 to=54)
ACD13_4_32

Not on your lists

25155..25775
DNA (621bp) protein (207aa)
seg (db=Seg db_id=seg from=15 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
Uncharacterized protein {ECO:0000313|EMBL:EKE12354.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_33

Not on your lists

26006..26443
DNA (438bp) protein (146aa)
Transcriptional repressor NrdR
seg (db=Seg db_id=seg from=25 to=36)
TIGR00244: transcriptional regulator NrdR (db=HMMTigr db_id=TIGR00244 from=1 to=145 evalue=4.4e-47 interpro_id=IPR003796 interpro_description=Ribonucleotide reductase regulator NrdR-like)
ATP-cone (db=HMMPfam db_id=PF03477 from=50 to=134 evalue=2.6e-16 interpro_id=IPR005144 interpro_description=ATP-cone)
ACD13_4_34

Not on your lists

26701..29157
DNA (2457bp) protein (819aa)
ribonucleoside-diphosphate reductase (EC:1.17.4.1)
ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LW74_SYNAS (db=UNIREF evalue=0.0 bit_score=730.0 identity=49.81 coverage=91.8192918192918)
seg (db=Seg db_id=seg from=483 to=496)
ACD13_4_35

Not on your lists

29837..30178
DNA (342bp) protein (114aa)
29837..30178 + (rbs_motif=ATA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12349.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_36

Not on your lists

31945..32547
DNA (603bp) protein (201aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=2.0e-48 bit_score=195.0 identity=48.22 coverage=95.5223880597015)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=110 evalue=2.9e-10)
Uncharacterized protein {ECO:0000313|EMBL:EKE12344.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_37

Not on your lists

32601..33452
DNA (852bp) protein (284aa)
UDP-glucose/GDP-mannose dehydrogenase dimerization
seg (db=Seg db_id=seg from=71 to=78)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=2 to=173 evalue=1.3e-33 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=172 evalue=3.3e-32)
ACD13_4_38

Not on your lists

33541..34218
DNA (678bp) protein (226aa)
hypothetical protein SgriT_21735 n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4B774 (db=UNIREF evalue=2.0e-10 bit_score=68.9 identity=29.51 coverage=50.8849557522124)
hypothetical protein (db=KEGG evalue=2.0e-08 bit_score=62.4 identity=28.12 coverage=40.2654867256637)
seg (db=Seg db_id=seg from=23 to=41)
Uncharacterized protein {ECO:0000313|EMBL:EKE12346.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_39

Not on your lists

comp(34331..35194)
DNA (864bp) protein (288aa)
hypothetical protein
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=113 to=274 evalue=1.4e-32 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=113 to=274 evalue=5.0e-30 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=113 to=273 evalue=8.3e-27 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD13_4_40

Not on your lists

35275..35664
DNA (390bp) protein (130aa)
coiled-coil (db=Coil db_id=coil from=46 to=74 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
DivIC (db=HMMPfam db_id=PF04977 from=24 to=98 evalue=3.6e-14 interpro_id=IPR007060 interpro_description=Septum formation initiator GO=Biological Process: cell cycle (GO:0007049))
Uncharacterized protein {ECO:0000313|EMBL:EKE12348.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_41

Not on your lists

36034..37026
DNA (993bp) protein (331aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
coiled-coil (db=Coil db_id=coil from=303 to=324 evalue=NA)
trpS: tryptophan--tRNA ligase (db=HMMTigr db_id=TIGR00233 from=1 to=326 evalue=4.4e-101 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
TRYPTOPHANYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR10055 from=8 to=326 evalue=1.5e-89 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
ACD13_4_42

Not on your lists

37019..37387
DNA (369bp) protein (123aa)
csaA; secretion chaperone CsaA
CsaA, csaA protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WK02_9GAMM (db=UNIREF evalue=1.0e-15 bit_score=85.5 identity=40.16 coverage=89.4308943089431)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=121 evalue=1.9e-23 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=121 evalue=6.7e-21 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD13_4_43

Not on your lists

37397..39292
DNA (1896bp) protein (632aa)
hypothetical protein
Cell division protein FtsH n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW9_9FIRM (db=UNIREF evalue=6.0e-146 bit_score=521.0 identity=47.71 coverage=88.7658227848101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
ACD13_4_44

Not on your lists

39317..40237
DNA (921bp) protein (307aa)
DNA polymerase I (EC:2.7.7.7)
no description (db=HMMSmart db_id=SM00475 from=2 to=268 evalue=2.9e-116 interpro_id=IPR002421 interpro_description=5'-3' exonuclease, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: 5'-3' exonuclease activity (GO:0008409))
DNA POLYMERASE I (db=HMMPanther db_id=PTHR10133 from=6 to=291 evalue=8.6e-72)
no description (db=Gene3D db_id=G3DSA:3.40.50.1010 from=3 to=213 evalue=6.8e-62)
ACD13_4_45

Not on your lists

40240..41373
DNA (1134bp) protein (378aa)
glycosyl transferase group 1
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=375 evalue=2.7e-94)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=2 to=375 evalue=2.7e-94)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=375 evalue=3.3e-58)
ACD13_4_46

Not on your lists

41392..42261
DNA (870bp) protein (290aa)
formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase (EC:3.2.2.23)
seg (db=Seg db_id=seg from=91 to=105)
ZF_FPG_1 (db=PatternScan db_id=PS01242 from=263 to=288 evalue=0.0 interpro_id=IPR015887 interpro_description=DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799))
FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) (db=HMMPanther db_id=PTHR22993:SF4 from=98 to=289 evalue=7.1e-28)
ACD13_4_47

Not on your lists

42284..43663
DNA (1380bp) protein (460aa)
alpha/beta hydrolase fold protein (db=KEGG evalue=1.0e-10 bit_score=71.6 identity=30.51 coverage=34.3478260869565)
seg (db=Seg db_id=seg from=386 to=404)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=200 to=449 evalue=2.9e-28)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=200 to=429 evalue=5.8e-24)
ACD13_4_48

Not on your lists

43704..44789
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF
DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT (db=UNIREF evalue=3.0e-58 bit_score=229.0 identity=38.53 coverage=91.4364640883978)
coiled-coil (db=Coil db_id=coil from=52 to=73 evalue=NA)
RECF_1 (db=PatternScan db_id=PS00617 from=128 to=148 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD13_4_49

Not on your lists

44797..45111
DNA (315bp) protein (105aa)
44797..45111 + (rbs_motif=ATAAT rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12342.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_50

Not on your lists

comp(45108..45374)
DNA (267bp) protein (89aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
seg (db=Seg db_id=seg from=64 to=80)
Uncharacterized protein {ECO:0000313|EMBL:EKE12343.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_51
GWA1_OP11_41_7, Woesebacteria, Microgenomates, Bacteria

Not on your lists

45727..46029
DNA (303bp) protein (101aa)
Carb_kinase (db=HMMPfam db_id=PF01256 from=32 to=68 evalue=9.8e-05 interpro_id=IPR000631 interpro_description=Uncharacterised protein family, carbohydrate kinase-related)
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:KKS18775.1}; TaxID=1618556 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_41_7.;"
ACD13_4_52

Not on your lists

46022..46411
DNA (390bp) protein (130aa)
seg (db=Seg db_id=seg from=60 to=71)
Carb_kinase (db=HMMPfam db_id=PF01256 from=11 to=122 evalue=1.7e-17 interpro_id=IPR000631 interpro_description=Uncharacterised protein family, carbohydrate kinase-related)
Ribokinase-like (db=superfamily db_id=SSF53613 from=11 to=129 evalue=6.8e-14)
no description (db=Gene3D db_id=G3DSA:3.40.1190.20 from=1 to=128 evalue=1.0e-11)
ACD13_4_53

Not on your lists

46460..47524
DNA (1065bp) protein (355aa)
hypothetical protein
Fic-like (db=superfamily db_id=SSF140931 from=78 to=273 evalue=5.5e-41)
Fic (db=HMMPfam db_id=PF02661 from=105 to=207 evalue=2.9e-19 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing, related)
SUBFAMILY NOT NAMED (db=HMMPanther db_id=PTHR13504:SF12 from=48 to=212 evalue=7.8e-15)
ACD13_4_54

Not on your lists

47540..47749
DNA (210bp) protein (70aa)
seg (db=Seg db_id=seg from=37 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
Uncharacterized protein {ECO:0000313|EMBL:EKE12332.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_4_55

Not on your lists

47769..49073
DNA (1305bp) protein (435aa)
ATP-dependent DNA ligase I (EC:6.5.1.1)
DNA ligase/mRNA capping enzyme, catalytic domain (db=superfamily db_id=SSF56091 from=212 to=417 evalue=2.6e-57)
DNA LIGASE I (db=HMMPanther db_id=PTHR10459:SF10 from=114 to=435 evalue=5.0e-57)
ATP-DEPENDENT DNA LIGASE FAMILY (db=HMMPanther db_id=PTHR10459 from=114 to=435 evalue=5.0e-57)
Displaying items 31-55 of 55 in total

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