ggKbase home page

ACD49_4

Alias: ACD49_39608.179668.22

Search features with annotation key words

Displaying items 61-90 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD49_4_61

Not on your lists

comp(66289..68766)
DNA (2478bp) protein (826aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
seg (db=Seg db_id=seg from=221 to=229)
coiled-coil (db=Coil db_id=coil from=513 to=541 evalue=NA)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=173 to=607 evalue=4.8e-43)
ACD49_4_62
ACD49, Gracilibacteria, Bacteria

Not on your lists

69386..70051
DNA (666bp) protein (222aa)
seg (db=Seg db_id=seg from=162 to=176)
seg 162..176 Tax=ACD49
ACD49_4_63
unknown

Not on your lists

70059..71126
DNA (1068bp) protein (356aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.-.-.-)
Oxygen-independent coproporphyrinogen III oxidase n=3 Tax=Fusobacterium RepID=C3WII8_9FUSO (db=UNIREF evalue=1.0e-40 bit_score=171.0 identity=37.19 coverage=77.5280898876404)
seg (db=Seg db_id=seg from=170 to=186)
seg (db=Seg db_id=seg from=284 to=301)
ACD49_4_64
ACD49, Gracilibacteria, Bacteria

Not on your lists

71497..72846
DNA (1350bp) protein (450aa)
murC; UDP-N-acetylmuramate--L-alanine ligase
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=119 to=448 evalue=1.6e-64)
UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE (db=HMMPanther db_id=PTHR23135:SF5 from=119 to=448 evalue=1.6e-64)
MurD-like peptide ligases, catalytic domain (db=superfamily db_id=SSF53623 from=99 to=298 evalue=6.2e-46 interpro_id=IPR013221 interpro_description=Mur ligase, central GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
ACD49_4_65
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(72874..73302)
DNA (429bp) protein (143aa)
hypothetical protein
hypothetical protein alias=ACD49_39608.179668.22G0065,ACD49_39608.179668.22_65,ACD49_C00004G00065 id=68921 tax=ACD49 species=Sulfurospirillum deleyianum genus=Sulfurospirillum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD49
ACD49_4_66
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(73364..75223)
DNA (1860bp) protein (620aa)
hypothetical protein
seg (db=Seg db_id=seg from=541 to=559)
seg (db=Seg db_id=seg from=475 to=487)
coiled-coil (db=Coil db_id=coil from=104 to=125 evalue=NA)
ACD49_4_67
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(75238..75996)
DNA (759bp) protein (253aa)
Dam-replacing family protein
Dam-replacing family protein
Dam-replacing family protein n=2 Tax=Francisella novicida RepID=A0Q8J0_FRATN (db=UNIREF evalue=2.0e-87 bit_score=325.0 identity=62.15 coverage=98.0237154150198)
DRP (db=HMMPfam db_id=PF06044 from=3 to=251 evalue=4.9e-113 interpro_id=IPR010324 interpro_description=Dam-replacing)
ACD49_4_68

Not on your lists

comp(76009..77160)
DNA (1152bp) protein (384aa)
protein of unknown function UPF0118
Putative uncharacterized protein n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX60_9BACL (db=UNIREF evalue=2.0e-13 bit_score=80.5 identity=25.86 coverage=58.0729166666667)
seg (db=Seg db_id=seg from=71 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=343 to=365)
ACD49_4_69
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(77563..78183)
DNA (621bp) protein (207aa)
seg (db=Seg db_id=seg from=58 to=71)
Lysozyme-like (db=superfamily db_id=SSF53955 from=91 to=176 evalue=4.4e-10)
SLT (db=HMMPfam db_id=PF01464 from=107 to=177 evalue=4.6e-08 interpro_id=IPR008258 interpro_description=Lytic transglycosylase-like, catalytic)
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=93 to=176 evalue=1.0e-06)
ACD49_4_70
ACD49, Gracilibacteria, Bacteria

Not on your lists


comp(78379..79062)
DNA (684bp) protein (228aa)
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=227 evalue=1.6e-85 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=1.2e-68 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
RIBOSOMAL PROTEIN L7AE FAMILY MEMBER (db=HMMPanther db_id=PTHR23105 from=21 to=225 evalue=2.5e-68)
ACD49_4_71
ACD49, Gracilibacteria, Bacteria

Not on your lists


comp(79164..80189)
DNA (1026bp) protein (342aa)
Phenylalanyl-tRNA synthetase, alpha subunit n=2 Tax=Clostridium RepID=B8I1X0_CLOCE (db=UNIREF evalue=2.0e-90 bit_score=335.0 identity=46.78 coverage=99.1228070175439)
pheS; phenylalanyl-tRNA synthetase subunit alpha
pheS; phenylalanyl-tRNA synthetase subunit alpha
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
ACD49_4_72
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(80352..81470)
DNA (1119bp) protein (373aa)
DNA polymerase III, beta subunit
seg (db=Seg db_id=seg from=88 to=101)
seg (db=Seg db_id=seg from=184 to=201)
no description (db=HMMSmart db_id=SM00480 from=17 to=368 evalue=2.4e-63 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD49_4_73
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(81547..82689)
DNA (1143bp) protein (381aa)
ATPase AAA
ATPase AAA
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZ39_DYAFD (db=UNIREF evalue=2.0e-86 bit_score=322.0 identity=46.19 coverage=98.1627296587926)
seg (db=Seg db_id=seg from=219 to=232)
ACD49_4_74
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(82801..83928)
DNA (1128bp) protein (376aa)
glycosyl transferase family protein
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=2 to=374 evalue=3.0e-67)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=374 evalue=3.0e-67)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=375 evalue=1.8e-27)
ACD49_4_75
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(83932..85185)
DNA (1254bp) protein (418aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=386 to=408)
transmembrane_regions (db=TMHMM db_id=tmhmm from=343 to=365)
transmembrane_regions (db=TMHMM db_id=tmhmm from=259 to=278)
transmembrane_regions (db=TMHMM db_id=tmhmm from=233 to=252)
ACD49_4_76
ACD49, ACD49, ACD49, ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(85207..85302)
DNA (96bp) protein (32aa)
seg (db=Seg db_id=seg from=5 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD49_4_77
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(85306..87990)
DNA (2685bp) protein (895aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=787 to=802)
seg (db=Seg db_id=seg from=634 to=647)
seg (db=Seg db_id=seg from=620 to=630)
ACD49_4_78
unknown

Not on your lists

comp(88039..89082)
DNA (1044bp) protein (348aa)
hypothetical protein
Hypothetical membrane associated protein n=1 Tax=Edwardsiella tarda ATCC 23685 RepID=D4F854_EDWTA (db=UNIREF evalue=6.0e-26 bit_score=122.0 identity=28.07 coverage=79.3103448275862)
seg (db=Seg db_id=seg from=6 to=17)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=209 to=342 evalue=2.9e-23)
ACD49_4_79
ACD49, Gracilibacteria, Bacteria

Not on your lists

89172..89567
DNA (396bp) protein (132aa)
TspO and MBR-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=68)
seg (db=Seg db_id=seg from=27 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
ACD49_4_80
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(89572..89859)
DNA (288bp) protein (96aa)
seg (db=Seg db_id=seg from=14 to=24)
seg 14..24 Tax=ACD49
ACD49_4_81
unknown

Not on your lists

comp(89862..90536)
DNA (675bp) protein (225aa)
protoporphyrinogen oxidase
Protoporphyrinogen oxidase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGB6_9HELI (db=UNIREF evalue=8.0e-14 bit_score=80.5 identity=35.07 coverage=85.3333333333333)
seg (db=Seg db_id=seg from=67 to=92)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=10 to=221 evalue=4.5e-22)
ACD49_4_82
unknown

Not on your lists

comp(90523..91320)
DNA (798bp) protein (266aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component
Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4I4_9DELT (db=UNIREF evalue=7.0e-13 bit_score=78.2 identity=45.0 coverage=37.218045112782)
seg (db=Seg db_id=seg from=28 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
ACD49_4_83
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(91359..92348)
DNA (990bp) protein (330aa)
methionyl-tRNA formyltransferase
seg (db=Seg db_id=seg from=253 to=266)
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=2 to=329 evalue=5.4e-54 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
Formyltransferase (db=superfamily db_id=SSF53328 from=2 to=209 evalue=3.1e-51 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD49_4_84
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(92350..93033)
DNA (684bp) protein (228aa)
seg (db=Seg db_id=seg from=8 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=38 evalue=1.3e-10)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=0.0032 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD49_4_85
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(93023..94141)
DNA (1119bp) protein (373aa)
undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (db=KEGG evalue=8.0e-11 bit_score=71.6 identity=32.98 coverage=47.7211796246649)
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=320 to=337)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=288)
ACD49_4_86
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(94160..94927)
DNA (768bp) protein (256aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=211 to=230)
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=89)
ACD49_4_87
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(95251..95493)
DNA (243bp) protein (81aa)
95251..95493 - (rbs_motif=TTTTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
ACD49_4_88
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(95575..96756)
DNA (1182bp) protein (394aa)
hypothetical protein
seg (db=Seg db_id=seg from=53 to=71)
seg (db=Seg db_id=seg from=86 to=101)
seg (db=Seg db_id=seg from=108 to=141)
ACD49_4_89
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(96779..97363)
DNA (585bp) protein (195aa)
coiled-coil (db=Coil db_id=coil from=108 to=129 evalue=NA)
seg (db=Seg db_id=seg from=26 to=37)
seg (db=Seg db_id=seg from=173 to=184)
coiled-coil 108..129 Tax=ACD49
ACD49_4_90
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(97384..98793)
DNA (1410bp) protein (470aa)
seg (db=Seg db_id=seg from=73 to=93)
seg (db=Seg db_id=seg from=4 to=16)
TPR-like (db=superfamily db_id=SSF48452 from=142 to=463 evalue=6.5e-15)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=191 to=439 evalue=1.1e-12 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
Displaying items 61-90 of 154 in total

View Taxonomy