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ACD15_20_27

Organism: ACD15

near complete RP 50 / 55 MC: 14 BSCG 47 / 51 MC: 5 ASCG 0 / 38
Location: comp(27036..27605)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.9
  • Coverage: 186.0
  • Bit_score: 128
  • Evalue 1.70e-27
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=20 to=182 evalue=2.1e-40 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.10e-40
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=112 evalue=3.8e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.80e-17

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 570
ATGGATAATAATCAAATTACCGATTGGGAGCTGATACAGCTTTCCAATAGGGATTCCAAGAATTTCAAGTATATTGTTGAGCGGTATCAGGTCCGTATTTTTCGCTATCTGAAAAGAATGGCTTACTTTTCCAACGAAGATATCGAGGATATGGTCCAGGAAGTTTTCATCAAAGTTTATCATAGCATGAATGACTTTGAATCCACGGACAAGTTTTCCAGTTTGATATACCGCATCGCTCACAATCATCTCGTTGACCGCATAAGGAGATCAAATAGCCGTGTTAAAGAAAATTTCTTTGAAGACGAAGATGCGTTGATGCTCGTCAGATCGGAAATAAATTTGGAAGCGGATTTAGCCAGTCAAGAAGCGGTAGAGAAAATAAAATTGGCTATTTCCCGATTGCCTGAGAATTATAGAGAAGCGCTGGTTCTGAAATTTTTGGAAGAAAAGACGATCGAGGAAATCGTGGATATTCTCAGAAAACCGCAAGGCACTGTGGCTACTCTTATCCGAAGAGGGAGGGAAATGCTCAAGAATGAATTATTAAAAGCAGGAATTTTCGCCTGA
PROTEIN sequence
Length: 190
MDNNQITDWELIQLSNRDSKNFKYIVERYQVRIFRYLKRMAYFSNEDIEDMVQEVFIKVYHSMNDFESTDKFSSLIYRIAHNHLVDRIRRSNSRVKENFFEDEDALMLVRSEINLEADLASQEAVEKIKLAISRLPENYREALVLKFLEEKTIEEIVDILRKPQGTVATLIRRGREMLKNELLKAGIFA*