ggKbase home page

ar4r2_scaffold_962_8

Organism: ALUMROCK_MS4_BD1-5_24_33_curated

partial RP 47 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 4 / 38 MC: 2
Location: comp(6161..7678)

Top 3 Functional Annotations

Value Algorithm Source
polysaccharide biosynthesis protein id=123787 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 similarity UNIREF
DB: UNIREF100
  • Identity: 46.8
  • Coverage: 504.0
  • Bit_score: 486
  • Evalue 2.30e-134
  • rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EKD30317.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.8
  • Coverage: 504.0
  • Bit_score: 486
  • Evalue 3.20e-134
polysaccharide biosynthesis protein similarity KEGG
DB: KEGG
  • Identity: 36.8
  • Coverage: 505.0
  • Bit_score: 366
  • Evalue 7.40e-99

Lists

This feature is not on any list.

Notes

14 TM domains. Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Jill Banfield (11/9/16)

Taxonomy

uncultured bacterium (gcode 4) → Bacteria

Sequences

DNA sequence
Length: 1518
ATGATAGATCAGCATAATAGTTTAGCAGAAAAGTTTTTGAAAAAATGAATTTGGTTATATATTTTTTCTTTTATTGTTGCTCCTATTGGATATATAGTAAAAATTATTTTATCTGGAGAATTATCAGTTGATGAAATATGAATTATTTATTGAGTTATGAGTTTAATGGTTTTATTAACCTCTTTTAATGACTTGTGAATGGCTGAAAGCTTGAATAGATTTATTCCAGAATTTATAACAGAAAAAAGATATGATAAAGTAAAAAGTATAATTGTTTATGCTATTTTAGCACAAATTATTACTTGATCTATTATTTTTCTTATTTTTTATTTTTGAGCCGATTATTTATCTGTAAATTATTTCAGAGACCCAAAAAGTGCTGAAATAATAAAGCTTTTCGCTTTTTTCTTTTTATGAACAACTTTTTTTCATGTTATAAATGTCTTTTTTGGGTCTGTACAAAACACTTTTTTACAAAAACTAAGTGAACTTTTGAGAATGCTTTTTATATTAGGTTTCATATGATATATGTTTATCAGTGGTTCTGGAAATATGTTCAATTATAGCTTAAGTTGGGTTTTATGATTATACTTCTGAATATTTATTTCAATCTTTTTCTTTTACAAAAATTATTACAAAAGTTATTTGAAAGATGTAAAAGTAATTTATTCTAAAGAATTTTTTCATAAAATATTTAATTATGCTTTAATTGTATTTTTATGATCTCAAGCCTCAACTTTATTAAGCCAAGTTGATATGCAAATGATTATTTATATGTTATGAAATACAGATGCTTGATATTATACAAATTATTTAAGTATTATTTCAATACCTTTTATGATTATTTGACCAATATTTTGATTCTTATTCCCAGTTTTTTCTGAAATGGTAGCTAAAAAAGAATTTGATAAAATCAAATTAATAAAATCTATTTTCACAAAAAATTTTTTATCTTTTTCTATAAGCTTTTCTATATTTTTTCTAGTTTTTGGAACAATTATTTCAACAGTTCTTTTTTGAGAAAAATTTTTACAATCAGGGGTAATATTACAATGGTCTGTTTTATTTCTAAGCTTTAACTTTTTATTACAAATTAATTTTAATATATTAGCTGCAAATGGAAGAATAAAAGAAAGATTAAACATAATTTTGATAGCTTTAGCAGTTAATACAATTCTAAATATTATATTTATTAAATTAATGTGAGTTACATGAGCTGCTCTTGCTACTTGATTTTGATGGCTTTTAATTTGGTTTCTATCTGAATTAAAACTAAAAGAATATAATTCTAACTTTGATTTCAAATATTTATTTAAAAATATTTTTATATTCAGCTTAATTTGATGATTGATATATTTCTTTTTAGTACCTTATTTTGAAAATATAAACAATAGGTTTTACGAATTTATACTACTATTTTTATTTTCTATAATATATTTCTGAATTTATTTTATAGTTAATTTTTCTGATTTTAAATATTTTTACAAAGAAATTAAAAAAATTAAAAGTTGAAAATAA
PROTEIN sequence
Length: 506
MIDQHNSLAEKFLKKGIWLYIFSFIVAPIGYIVKIILSGELSVDEIGIIYGVMSLMVLLTSFNDLGMAESLNRFIPEFITEKRYDKVKSIIVYAILAQIITGSIIFLIFYFGADYLSVNYFRDPKSAEIIKLFAFFFLGTTFFHVINVFFGSVQNTFLQKLSELLRMLFILGFIGYMFISGSGNMFNYSLSWVLGLYFGIFISIFFFYKNYYKSYLKDVKVIYSKEFFHKIFNYALIVFLGSQASTLLSQVDMQMIIYMLGNTDAGYYTNYLSIISIPFMIIGPIFGFLFPVFSEMVAKKEFDKIKLIKSIFTKNFLSFSISFSIFFLVFGTIISTVLFGEKFLQSGVILQWSVLFLSFNFLLQINFNILAANGRIKERLNIILIALAVNTILNIIFIKLMGVTGAALATGFGWLLIWFLSELKLKEYNSNFDFKYLFKNIFIFSLIGGLIYFFLVPYFENINNRFYEFILLFLFSIIYFGIYFIVNFSDFKYFYKEIKKIKSGK*