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gwa2_scaffold_24187_1

Organism: GWA2_OP11_39_19

near complete RP 41 / 55 BSCG 45 / 51 MC: 1 ASCG 8 / 38
Location: 3..497

Top 3 Functional Annotations

Value Algorithm Source
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_01_40_20_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 164.0
  • Bit_score: 317
  • Evalue 8.30e-84
RpoD subfamily RNA polymerase sigma-70 subunit KEGG
DB: KEGG
  • Identity: 71.3
  • Coverage: 164.0
  • Bit_score: 235
  • Evalue 8.30e-60
RNA polymerase sigma factor similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 235
  • Evalue 1.00e+00

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Taxonomy

R_RIF_OP11_01_40_20 → RIF-OP11-1 → Microgenomates → Bacteria

Sequences

DNA sequence
Length: 495
ACTATTAGAATCCCAGTTCATATGGTGGAGACAATCAATAAACTTTTCCGGGTTTCTCGAAAGCTGATGCAAGAATTAGGTCGGGAGCCTACTCCTGAGGAGATAGCTGACGAGATGGGGATGTCCTCAGACAGAGTTCGAGAAATTTTCAAAATTGCCCAGGAGGTTACTTCAATTGATGCAAAGGTCGGAGAAGAAGAAGACAGTTTACTTGGAGACTTTATCGAAGATACAACTCAACCTTCTCCAGTTGACCAAGCATCGCGAGAATTGTTAAAAGAAAGCTTGGAAGAAGTTTTTTCAACTTTAACAGATAGAGAGTCGAGGGTGTTGAAATTAAGATTTGGAATAAACGGTAGCAAGCCAATGACTTTGGAGGAAGTTGGACGAGAGTTTGGTGTTACCCGTGAGAGAATTCGTCAAATTGAAGCAAAGGCTCTTCGTAAGTTAAAGCACCCATCACGCCGCAAAAAACTTCAGGATTATTTAGATTAG
PROTEIN sequence
Length: 165
TIRIPVHMVETINKLFRVSRKLMQELGREPTPEEIADEMGMSSDRVREIFKIAQEVTSIDAKVGEEEDSLLGDFIEDTTQPSPVDQASRELLKESLEEVFSTLTDRESRVLKLRFGINGSKPMTLEEVGREFGVTRERIRQIEAKALRKLKHPSRRKKLQDYLD*