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ACD18_106_3

Organism: ACD18

near complete RP 50 / 55 MC: 17 BSCG 44 / 51 MC: 8 ASCG 0 / 38
Location: comp(1412..1912)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 38.5
  • Coverage: 148.0
  • Bit_score: 88
  • Evalue 1.70e-15
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=2 to=162 evalue=1.9e-26 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.90e-26
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=110 to=158 evalue=3.5e-14 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.50e-14

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Taxonomy

RIFOXYC2_FULL_OD1_Magasanikbacteria_39_8_curated → Magasanikbacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 501
TTGAAATCAATCAGGACATGGCAAGGACGTTTCGNNNNNNNNNNATTCATTTTTTTGAAGGTTAGAACTAAGGAAGATGCAGAGGATATTACAAATGAAGTTTTCTTAAAAACTTGGCAACACATTACAAAAAATAAGGAAGACACAGAAGAAAATATTAGAAGTTTTAGTGGATTGATTTATAAGATCGCAAGGAACTCAATAGTAGATCATTATAGAAAAAGATCTAGAGATAATGAAAATAAACTTGGACTTTTGGAAAATTTATCAGAAAAAAGAGACATACTTAAACAAGTTGAAATCAATCAGGATATAACAAGAACATTTCAACTATTACGAAAATTAAAACAAGAATATCAAGAAGTAGTATTACTTCGGTATACAGAAGAGCTTTCCATAAAGGAAATATCTGATATTATCGGTAAGAAACCTACAGCAATTCGTGTAACATTGCATAGGGCATTGAAAAAACTTAAACAACTTGCAGAAAAAACTCCATAG
PROTEIN sequence
Length: 167
LKSIRTWQGRFXXXXFIFLKVRTKEDAEDITNEVFLKTWQHITKNKEDTEENIRSFSGLIYKIARNSIVDHYRKRSRDNENKLGLLENLSEKRDILKQVEINQDITRTFQLLRKLKQEYQEVVLLRYTEELSIKEISDIIGKKPTAIRVTLHRALKKLKQLAEKTP*