ggKbase home page
Advanced Search
Search Help

BJP_Ig2157_Hor_140_2014_Thermoplasmata_53_6

07V140M03_2014_Euryarchaeota_52_6
In projects: 07V140M03_2014  |  diaphorachaeota  |  archaea_ggkbase  |  horonobe_genomes

Consensus taxonomy: Euryarchaeota  →  Archaea

Metagenomic Context

Parent: BJP_IG2157_UNK

Properties

Avg. coverage: 6.27 Longest contig: 13.27 Kbp Bin length: 776.56 Kbp GC content: 52.38 %
Contigs count: 246 Features count: 885 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 25 / 55 BSCG 9 / 51 ASCG 28 / 38 MC: 3

Description

Fragmented. May not be clean -->curated, please check (YA) Thermoplasmata archaeon HGW-Thermoplasmata-2 (possibly novel; 61.1% of identity based on NCBI blast search) old name; BJP_IG2157_Euryarchaeota_53_6

Displaying items 1-50 of 246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig2157_scaffold_25933
Species: Aciduliprofundum sp. MAR08-339 (100%)
1 1110 bp 49.73 2.70 99.73
bjp_ig2157_scaffold_25128
Species: Methanocella paludicola (100%)
1 1139 bp 54.08 2.77 55.58
bjp_ig2157_scaffold_25769
Species: groundwater metagenome (50%)
2 1116 bp 48.75 2.96 92.74
bjp_ig2157_scaffold_23077
Species: Methanobacterium formicicum (50%)
2 1225 bp 46.12 3.18 86.94
bjp_ig2157_scaffold_23565
Species: RBG_16_Euryarchaeota_41_19_curated (50%)
2 1203 bp 49.88 3.24 80.80
bjp_ig2157_scaffold_24923
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1147 bp 52.31 3.53 80.56
bjp_ig2157_scaffold_18216
Species: Thermococcus gammatolerans (50%)
2 1479 bp 55.98 3.55 76.06
bjp_ig2157_scaffold_21057
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1320 bp 52.88 3.86 94.09
bjp_ig2157_scaffold_29271
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
2 1000 bp 53.40 3.90 83.40
bjp_ig2157_scaffold_21502
Species: RBG_16_Chloroflexi_50_11_curated (100%)
1 1298 bp 51.46 3.93 99.85
bjp_ig2157_scaffold_18756
Species: Thermoplasmatales archaeon SCGC AB-539-C06 (100%)
1 1446 bp 54.43 3.94 92.53
bjp_ig2157_scaffold_14803
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1743 bp 55.71 4.04 99.83
bjp_ig2157_scaffold_14928
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1733 bp 53.32 4.15 79.28
bjp_ig2157_scaffold_13544
Species: BJP_IG2069_Spirochaetales_48_31 (50%)
2 1862 bp 47.53 4.19 97.15
bjp_ig2157_scaffold_3947 8 4426 bp 50.50 4.20 90.28
bjp_ig2157_scaffold_23297
Species: RBG_16_Chloroflexi_57_11_curated (100%)
1 1215 bp 51.60 4.20 98.27
bjp_ig2157_scaffold_14327
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1787 bp 56.52 4.28 97.87
bjp_ig2157_scaffold_2117 5 6704 bp 50.92 4.30 98.09
bjp_ig2157_scaffold_20451
Species: BJP_IG2157_Anaerolineales_55_23 (100%)
1 1352 bp 51.63 4.33 99.85
bjp_ig2157_scaffold_25388
Species: Methanocaldococcus fervens (50%)
2 1130 bp 49.12 4.38 80.97
bjp_ig2157_scaffold_16009
Phylum: Euryarchaeota (66.67%)
3 1638 bp 52.20 4.40 89.01
bjp_ig2157_scaffold_18494
Species: BJP_IG2069_Methanobacteriales_33_27 (100%)
2 1462 bp 46.51 4.41 69.36
bjp_ig2157_scaffold_22463
Species: marine sediment metagenome (100%)
1 1252 bp 53.67 4.43 89.14
bjp_ig2157_scaffold_15089
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 1718 bp 55.24 4.45 75.61
bjp_ig2157_scaffold_27198
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1066 bp 52.44 4.50 99.91
bjp_ig2157_scaffold_13178
Phylum: Euryarchaeota (66.67%)
3 1904 bp 48.74 4.57 94.85
bjp_ig2157_scaffold_21509
Species: Thermococcus gammatolerans (100%)
1 1297 bp 58.52 4.63 82.58
bjp_ig2157_scaffold_28116
Species: Aciduliprofundum boonei (100%)
1 1036 bp 52.41 4.63 81.08
bjp_ig2157_scaffold_6741
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 3107 bp 49.73 4.63 69.23
bjp_ig2157_scaffold_20346
Phylum: Euryarchaeota (66.67%)
3 1357 bp 51.81 4.64 86.44
bjp_ig2157_scaffold_27173
Species: Methanocella conradii (100%)
1 1067 bp 54.92 4.64 99.81
bjp_ig2157_scaffold_24546
Species: Methanococcoides methylutens (50%)
2 1162 bp 54.56 4.65 87.26
bjp_ig2157_scaffold_23213
Species: BJP_08E140C01_Anaerolineales_40_8 (100%)
1 1218 bp 49.01 4.68 92.86
bjp_ig2157_scaffold_19497
Species: Methanolacinia petrolearia (50%)
2 1403 bp 48.68 4.70 91.52
bjp_ig2157_scaffold_11517
Phylum: Euryarchaeota (50%)
4 2107 bp 49.50 4.70 89.13
bjp_ig2157_scaffold_18156
Species: RBG_13_Euryarchaeota_61_15_curated (50%)
2 1484 bp 51.42 4.75 90.16
bjp_ig2157_scaffold_26254
Species: RBG_16_Chloroflexi_48_7_curated (50%)
2 1099 bp 53.69 4.78 90.90
bjp_ig2157_scaffold_3889
Phylum: Euryarchaeota (60%)
5 4474 bp 48.61 4.79 87.51
bjp_ig2157_scaffold_9981
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 2337 bp 50.24 4.81 57.77
bjp_ig2157_scaffold_22258
Species: Methanobrevibacter sp. AbM4 (50%)
2 1262 bp 53.96 4.87 67.04
bjp_ig2157_scaffold_14079
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
2 1813 bp 54.66 4.88 93.49
bjp_ig2157_scaffold_3011
Phylum: Euryarchaeota (50%)
4 5330 bp 49.31 4.90 85.78
bjp_ig2157_scaffold_4487
Phylum: Euryarchaeota (57.14%)
7 4093 bp 52.85 4.95 70.00
bjp_ig2157_scaffold_8376
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 2660 bp 48.61 4.96 89.32
bjp_ig2157_scaffold_19799
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (100%)
1 1386 bp 47.62 4.98 99.78
bjp_ig2157_scaffold_8598
Phylum: Euryarchaeota (60%)
5 2608 bp 53.14 5.00 89.95
bjp_ig2157_scaffold_20508
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1349 bp 51.74 5.00 90.73
bjp_ig2157_scaffold_15006
Phylum: Euryarchaeota (50%)
4 1725 bp 50.72 5.04 80.93
bjp_ig2157_scaffold_17703
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1515 bp 53.47 5.05 100.99
bjp_ig2157_scaffold_4911
Order: Thermoplasmatales (60%)
5 3850 bp 52.47 5.06 95.22
Displaying items 1-50 of 246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.