ggKbase home page
Advanced Search
Search Help

BJP_IG2102_Hor_167_2014_ACD39_51_10_curated

BJP_IG2102_unknown_50_1
In projects: 08E140C01_zone5_2014  |  ggdb  |  horonobe_genomes

Consensus taxonomy:

Metagenomic Context

Manually curated genome Candidate phylum (ggDB)

Properties

Avg. coverage: 1.00 Longest contig: 220.92 Kbp Bin length: 5.07 Mbp GC content: 50.05 %
Contigs count: 104 Features count: 4117 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 BSCG 39 / 51 ASCG 12 / 38 MC: 1

Description

Riflebacteria

Displaying items 1-50 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig2102_scaffold_236_curated 188 220918 bp 49.71 1.00 91.40
bjp_ig2102_scaffold_191_curated 145 184352 bp 50.65 1.00 94.66
bjp_ig2102_scaffold_141_curated 135 166368 bp 49.92 1.00 93.55
bjp_ig2102_scaffold_186_curated 132 158516 bp 49.78 1.00 92.37
bjp_ig2102_scaffold_86_curated 125 155764 bp 50.61 1.00 93.53
bjp_ig2102_scaffold_131_curated 100 128004 bp 51.05 1.00 95.14
bjp_ig2102_scaffold_179_curated 97 121375 bp 49.41 1.00 91.82
bjp_ig2102_scaffold_221_curated 95 118167 bp 49.52 1.00 94.68
bjp_ig2102_scaffold_265_curated 93 110603 bp 49.90 1.00 92.70
bjp_ig2102_scaffold_407_curated 92 113621 bp 51.14 1.00 93.93
bjp_ig2102_scaffold_116_curated 90 133426 bp 49.84 1.00 93.29
bjp_ig2102_scaffold_328_curated 87 98956 bp 49.38 1.00 92.12
bjp_ig2102_scaffold_173_curated 87 108510 bp 50.10 1.00 91.90
bjp_ig2102_scaffold_295_curated 84 96477 bp 48.71 1.00 89.80
bjp_ig2102_scaffold_185_curated 84 105136 bp 50.26 1.00 91.32
bjp_ig2102_scaffold_490_curated 76 104837 bp 51.31 1.00 91.63
bjp_ig2102_scaffold_310_curated 72 96286 bp 50.09 1.00 94.98
bjp_ig2102_scaffold_426_curated 71 71364 bp 49.31 1.00 92.85
bjp_ig2102_scaffold_340_curated 69 75683 bp 49.87 1.00 92.93
bjp_ig2102_scaffold_333_curated 67 79234 bp 47.31 1.00 94.99
bjp_ig2102_scaffold_307_curated 67 74578 bp 49.43 1.00 90.55
bjp_ig2102_scaffold_726_curated 59 77828 bp 51.16 1.00 92.44
bjp_ig2102_scaffold_311_curated 59 74029 bp 50.89 1.00 93.97
bjp_ig2102_scaffold_431_curated 56 57237 bp 50.01 1.00 95.79
bjp_ig2102_scaffold_271_curated 56 80260 bp 49.09 1.00 94.68
bjp_ig2102_scaffold_478_curated 56 53754 bp 50.71 1.00 92.52
bjp_ig2102_scaffold_547_curated 54 76960 bp 51.11 1.00 95.86
bjp_ig2102_scaffold_384_curated 53 61993 bp 50.84 1.00 90.33
bjp_ig2102_scaffold_348_curated 51 66804 bp 50.29 1.00 94.53
bjp_ig2102_scaffold_507_curated 48 51787 bp 50.23 1.00 92.26
bjp_ig2102_scaffold_381_curated 48 62277 bp 49.89 1.00 93.41
bjp_ig2102_scaffold_472_curated 47 54074 bp 51.05 1.00 94.76
bjp_ig2102_scaffold_794_curated 44 58349 bp 49.32 1.00 92.72
bjp_ig2102_scaffold_256_curated 44 85075 bp 51.15 1.00 94.19
bjp_ig2102_scaffold_555_curated 42 48472 bp 49.97 1.00 92.45
bjp_ig2102_scaffold_653_curated 41 42423 bp 48.95 1.00 95.09
bjp_ig2102_scaffold_699_curated 39 40452 bp 48.29 1.00 89.47
bjp_ig2102_scaffold_1130_curated 38 46682 bp 49.60 1.00 93.07
bjp_ig2102_scaffold_368_curated 38 64098 bp 49.89 1.00 95.31
bjp_ig2102_scaffold_741_curated 33 38515 bp 52.01 1.00 91.23
bjp_ig2102_scaffold_626_curated 33 43761 bp 52.04 1.00 93.23
bjp_ig2102_scaffold_664_curated 33 52995 bp 50.55 1.00 92.81
bjp_ig2102_scaffold_691_curated 32 40641 bp 48.75 1.00 85.83
bjp_ig2102_scaffold_976_curated 32 47349 bp 50.85 1.00 92.33
bjp_ig2102_scaffold_768_curated 30 37250 bp 50.44 1.00 93.46
bjp_ig2102_scaffold_769_curated 30 37259 bp 50.12 1.00 94.66
bjp_ig2102_scaffold_800_curated
Domain: Bacteria (53.33%)
30 35943 bp 48.20 1.00 92.41
bjp_ig2102_scaffold_804_curated 30 35923 bp 51.70 1.00 89.88
bjp_ig2102_scaffold_924_curated 29 31965 bp 48.27 1.00 90.24
bjp_ig2102_scaffold_1015_curated 27 29554 bp 51.65 1.00 91.12
Displaying items 1-50 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.