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LEY3_Clostridiales_Nov_37_41

LEY3_Clostridiales_38_40
In projects: ley3

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: Ley3_UNK

Properties

Avg. coverage: 40.41 Longest contig: 107.92 Kbp Bin length: 2.75 Mbp GC content: 37.55 %
Contigs count: 295 Features count: 2958 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 46 / 55 MC: 1 BSCG 44 / 51 MC: 3 ASCG 12 / 38 MC: 1

Description

Good

Displaying items 1-50 of 295 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Ley3_66761_scaffold_825 LEY3_Clostridia_37_41_2
Genus: Ruminococcus (53.33%)
90 107923 bp 37.21 44.14 84.47
Ley3_66761_scaffold_1495 LEY3_Clostridia_37_41_5
Order: Clostridiales (57.83%)
83 58821 bp 39.46 44.38 88.34
Ley3_66761_scaffold_571 LEY3_Clostridia_37_41_1
Order: Clostridiales (81.08%)
74 63184 bp 38.19 42.82 86.34
Ley3_66761_scaffold_1708 LEY3_Clostridia_37_41_7
Order: Clostridiales (76.47%)
68 67937 bp 37.91 37.76 90.83
Ley3_66761_scaffold_873 LEY3_Clostridia_37_41_3
Order: Clostridiales (58.7%)
46 47034 bp 33.26 41.48 90.92
Ley3_66761_scaffold_1466 LEY3_Clostridia_37_41_4
Species: Roseburia sp. CAG:100 (50%)
42 35796 bp 39.74 55.15 83.98
Ley3_66761_scaffold_2544 LEY3_Clostridia_37_41_11
Order: Clostridiales (81.25%)
32 35045 bp 37.47 36.30 75.81
Ley3_66761_scaffold_2806 LEY3_Clostridia_37_41_14
Species: Clostridium sp. CAG:62 (50%)
32 30183 bp 39.52 32.68 88.45
Ley3_66761_scaffold_3652 LEY3_Clostridia_37_41_27
Order: Clostridiales (93.33%)
30 31016 bp 37.49 32.43 91.83
Ley3_66761_scaffold_3000 LEY3_Clostridia_37_41_15
Order: Clostridiales (79.31%)
29 24641 bp 38.51 38.52 87.76
Ley3_66761_scaffold_3452 LEY3_Clostridia_37_41_21
Order: Clostridiales (81.48%)
27 29427 bp 37.83 43.36 90.45
Ley3_66761_scaffold_6349 LEY3_Clostridia_37_41_90
Order: Clostridiales (85.19%)
27 22100 bp 37.23 40.90 82.36
Ley3_66761_scaffold_4467 LEY3_Clostridia_37_41_49
Order: Clostridiales (65.38%)
26 20147 bp 39.39 32.48 94.50
Ley3_66761_scaffold_1697 LEY3_Clostridia_37_41_6
Order: Clostridiales (92.31%)
26 28351 bp 36.84 37.37 89.70
Ley3_66761_scaffold_3918 LEY3_Clostridia_37_41_34
Order: Clostridiales (57.69%)
26 28539 bp 36.77 32.30 84.87
Ley3_66761_scaffold_2752 LEY3_Clostridia_37_41_13
Order: Clostridiales (92%)
25 16516 bp 36.66 47.54 91.29
Ley3_66761_scaffold_2530 LEY3_Clostridia_37_41_10
Species: Anaerostipes hadrus (54.17%)
24 23755 bp 37.66 33.57 92.96
Ley3_66761_scaffold_3602 LEY3_Clostridia_37_41_26
Species: Ruminococcus sp. CAG:55 (66.67%)
24 25258 bp 39.25 39.30 76.79
Ley3_66761_scaffold_3928 LEY3_Clostridia_37_41_35
Order: Clostridiales (100%)
23 17440 bp 35.73 41.96 78.72
Ley3_66761_scaffold_3548 LEY3_Clostridia_37_41_23
Order: Clostridiales (86.96%)
23 21254 bp 39.27 46.58 86.47
Ley3_66761_scaffold_5135 LEY3_Clostridia_37_41_61
Order: Clostridiales (73.91%)
23 22290 bp 36.66 36.41 89.92
Ley3_66761_scaffold_3364 LEY3_Clostridia_37_41_19
Order: Clostridiales (73.91%)
23 17206 bp 35.88 35.89 93.51
Ley3_66761_scaffold_3987 LEY3_Clostridia_37_41_36
Species: Lachnospiraceae bacterium CAG:25 (52.38%)
21 16036 bp 38.76 38.88 97.97
Ley3_66761_scaffold_4671 LEY3_Clostridia_37_41_56
Order: Clostridiales (66.67%)
21 19050 bp 38.13 32.17 95.51
Ley3_66761_scaffold_3392 LEY3_Clostridia_37_41_20
Order: Clostridiales (95.24%)
21 20658 bp 38.17 34.56 90.11
Ley3_66761_scaffold_4160 LEY3_Clostridia_37_41_42
Order: Clostridiales (90.48%)
21 22134 bp 39.00 34.77 90.77
Ley3_66761_scaffold_2666 LEY3_Clostridia_37_41_12
Order: Clostridiales (60%)
20 22546 bp 38.10 38.04 84.29
Ley3_66761_scaffold_4370 LEY3_Clostridia_37_41_46
Order: Clostridiales (85%)
20 18128 bp 39.07 42.12 97.56
Ley3_66761_scaffold_6213 LEY3_Clostridia_37_41_87
Order: Clostridiales (75%)
20 20307 bp 36.93 37.01 82.88
Ley3_66761_scaffold_2176 LEY3_Clostridia_37_41_8
Order: Clostridiales (73.68%)
19 22479 bp 39.79 42.94 94.19
Ley3_66761_scaffold_6822 LEY3_Clostridia_37_41_96
Order: Clostridiales (89.47%)
19 19271 bp 35.34 48.14 90.43
Ley3_66761_scaffold_3252 LEY3_Clostridia_37_41_17
Order: Clostridiales (68.42%)
19 13629 bp 39.59 41.47 88.07
Ley3_66761_scaffold_3571 LEY3_Clostridia_37_41_24
Order: Clostridiales (89.47%)
19 19677 bp 37.63 36.63 94.94
Ley3_66761_scaffold_6710 LEY3_Clostridia_37_41_93
Order: Clostridiales (73.68%)
19 20956 bp 35.89 35.28 82.99
Ley3_66761_scaffold_6238 LEY3_Clostridia_37_41_88
Order: Clostridiales (77.78%)
18 16651 bp 37.72 41.44 96.03
Ley3_66761_scaffold_3989 LEY3_Clostridia_37_41_38
Order: Clostridiales (66.67%)
18 10639 bp 38.82 41.44 85.27
Ley3_66761_scaffold_7327 LEY3_Clostridia_37_41_113
Species: Anaerostipes hadrus (50%)
18 18562 bp 36.67 44.97 86.92
Ley3_66761_scaffold_3546 LEY3_Clostridia_37_41_22
Order: Clostridiales (77.78%)
18 16284 bp 38.58 44.03 95.58
Ley3_66761_scaffold_3572 LEY3_Clostridia_37_41_25
Order: Clostridiales (77.78%)
18 16715 bp 36.78 40.33 81.99
Ley3_66761_scaffold_4240 LEY3_Clostridia_37_41_44
Order: Clostridiales (76.47%)
17 13221 bp 35.97 41.22 85.93
Ley3_66761_scaffold_4314 LEY3_Clostridia_37_41_45
Order: Clostridiales (88.24%)
17 15478 bp 36.70 40.17 84.06
Ley3_66761_scaffold_5920 LEY3_Clostridia_37_41_78
Species: Ruminococcus sp. CAG:55 (52.94%)
17 14333 bp 39.98 34.09 78.30
Ley3_66761_scaffold_3892 LEY3_Clostridia_37_41_32
Genus: Anaerostipes (58.82%)
17 19900 bp 37.39 45.82 92.28
Ley3_66761_scaffold_2382 LEY3_Clostridia_37_41_9
Species: [Ruminococcus] torques (76.47%)
17 25108 bp 39.92 32.91 92.74
Ley3_66761_scaffold_8285 LEY3_Clostridia_37_41_143
Order: Clostridiales (87.5%)
16 14104 bp 38.85 38.57 80.25
Ley3_66761_scaffold_5227 LEY3_Clostridia_37_41_63
Species: Anaerostipes hadrus (50%)
16 12133 bp 36.33 35.73 76.50
Ley3_66761_scaffold_8878 LEY3_Clostridia_37_41_162
Order: Clostridiales (87.5%)
16 16472 bp 36.42 37.06 81.27
Ley3_66761_scaffold_14540 LEY3_Clostridia_37_41_245
Order: Clostridiales (56.25%)
16 11478 bp 38.98 39.07 80.27
Ley3_66761_scaffold_7418 LEY3_Clostridia_37_41_117
Order: Clostridiales (75%)
16 18078 bp 38.46 36.53 91.20
Ley3_66761_scaffold_3336 LEY3_Clostridia_37_41_18
Species: Faecalibacterium prausnitzii (56.25%)
16 13234 bp 36.47 37.28 95.93
Displaying items 1-50 of 295 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.