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ACD20_14

Alias: ACD20_11235.20382.14

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_14_1

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comp(61..1086)
DNA (1026bp) protein (342aa)
putative lactate dehydrogenase
seg (db=Seg db_id=seg from=147 to=166)
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=227 to=243 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
D_2_HYDROXYACID_DH_2 (db=PatternScan db_id=PS00670 from=198 to=220 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD20_14_2

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1265..2212
DNA (948bp) protein (316aa)
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=3 to=177 evalue=5.4e-49 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=7 to=168 evalue=1.4e-43)
no description (db=HMMSmart db_id=SM00479 from=8 to=172 evalue=7.6e-39 interpro_id=IPR006055 interpro_description=Exonuclease GO=Molecular Function: exonuclease activity (GO:0004527), Cellular Component: intracellular (GO:0005622))
ACD20_14_3

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comp(2276..2653)
DNA (378bp) protein (126aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=20 to=123 evalue=3.4e-10 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Thioredoxin (db=HMMPfam db_id=PF00085 from=31 to=121 evalue=2.8e-06 interpro_id=IPR013766 interpro_description=Thioredoxin domain GO=Biological Process: cell redox homeostasis (GO:0045454))
Uncharacterized protein {ECO:0000313|EMBL:EKE04678.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_4

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comp(2707..3201)
DNA (495bp) protein (165aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
DUF192 (db=HMMPfam db_id=PF02643 from=51 to=155 evalue=1.1e-32 interpro_id=IPR003795 interpro_description=Protein of unknown function DUF192)
hypothetical protein; K09005 hypothetical protein alias=ACD20_C00014G00004,ACD20_11235.20382.14G0004,ACD20_11235.20382.14_4 id=18148 tax=ACD20 species=unknown genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_14_5

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comp(3167..4768)
DNA (1602bp) protein (534aa)
lnt; apolipoprotein N-acyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
ACD20_14_6

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4962..5420
DNA (459bp) protein (153aa)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GTP9_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=48.67 coverage=94.7712418300653)
crossover junction endodeoxyribonuclease RuvC
RuvC (db=HMMPfam db_id=PF02075 from=3 to=146 evalue=1.9e-35 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=1 to=148 evalue=6.7e-35)
ACD20_14_7

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5534..6418
DNA (885bp) protein (295aa)
hypothetical protein
DUF362 (db=HMMPfam db_id=PF04015 from=29 to=256 evalue=1.4e-19 interpro_id=IPR007160 interpro_description=Protein of unknown function DUF362)
Uncharacterized protein {ECO:0000313|EMBL:EKE04682.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
protein of unknown function DUF362 alias=ACD20_C00014G00007,ACD20_11235.20382.14G0007,ACD20_11235.20382.14_7 id=18149 tax=ACD20 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_14_8

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6480..7637
DNA (1158bp) protein (386aa)
hypothetical protein
hypothetical protein
Anhydro-N-acetylmuramic acid kinase n=3 Tax=Thermoanaerobacteraceae RepID=ANMK_THETN (db=UNIREF evalue=2.0e-99 bit_score=365.0 identity=47.45 coverage=97.9274611398964)
UPF0075 (db=HMMPfam db_id=PF03702 from=10 to=381 evalue=3.7e-111 interpro_id=IPR005338 interpro_description=Anhydro-N-acetylmuramic acid kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: amino sugar metabolic process (GO:0006040), Biological Process: peptidoglycan turnover (GO:0009254), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
ACD20_14_9

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comp(7778..9334)
DNA (1557bp) protein (519aa)
nnr; Bifunctional NAD(P)H-hydrate repair enzyme Nnr [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase ; NAD(P)H-hydrate epimerase] (EC:4.2.1.136 5.1.99.6)
nnr; Bifunctional NAD(P)H-hydrate repair enzyme Nnr [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase ; NAD(P)H-hydrate epimerase] (EC:4.2.1.136 5.1.99.6)
Predicted Carbohydrate kinase n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4H8_PELTS (db=UNIREF evalue=5.0e-101 bit_score=372.0 identity=40.77 coverage=98.8439306358381)
no description (db=Gene3D db_id=G3DSA:3.40.1190.20 from=227 to=518 evalue=5.8e-77)
ACD20_14_10

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9661..10089
DNA (429bp) protein (143aa)
9661..10089 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04685.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_11

Not on your lists

comp(10101..10577)
DNA (477bp) protein (159aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Geobacter sp. M18 RepID=C6MVS8_9DELT (db=UNIREF evalue=6.0e-51 bit_score=202.0 identity=62.09 coverage=95.5974842767296)
tRNA/rRNA methyltransferase SpoU
Predicted S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU type (db=HMMPIR db_id=PIRSF029256 from=1 to=157 evalue=3.7e-82 interpro_id=IPR016914 interpro_description=S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU, predicted)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=1 to=153 evalue=4.7e-49)
ACD20_14_12

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comp(10579..11172)
DNA (594bp) protein (198aa)
CDP-alcohol phosphatidyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=41)
seg (db=Seg db_id=seg from=163 to=177)
seg (db=Seg db_id=seg from=139 to=152)
ACD20_14_13

Not on your lists

comp(11684..12409)
DNA (726bp) protein (242aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=20 to=40)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=16 to=39 evalue=1.0e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
N_methyl (db=HMMPfam db_id=PF07963 from=17 to=35 evalue=9.5e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD20_14_14

Not on your lists

comp(12632..12739)
DNA (108bp) protein (36aa)
12632..12739 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04689.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_15

Not on your lists

comp(12892..13521)
DNA (630bp) protein (210aa)
ankyrin repeat-containing protein
Ankyrin repeat (db=superfamily db_id=SSF48403 from=60 to=187 evalue=7.3e-28 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=59 to=176 evalue=4.9e-23 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=55 to=186 evalue=6.9e-16)
ACD20_14_16

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13794..14342
DNA (549bp) protein (183aa)
hypothetical protein
Transposase IS200-like (db=superfamily db_id=SSF143422 from=1 to=142 evalue=1.0e-29)
Transposase_17 (db=HMMPfam db_id=PF01797 from=11 to=135 evalue=2.9e-15 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Uncharacterized protein {ECO:0000313|EMBL:EKE04691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_17

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comp(14486..14878)
DNA (393bp) protein (131aa)
14486..14878 - (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04692.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_18

Not on your lists

15131..15862
DNA (732bp) protein (244aa)
hypothetical protein
seg (db=Seg db_id=seg from=19 to=34)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=2 to=173 evalue=4.3e-11 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
Cas_Cas4 (db=HMMPfam db_id=PF01930 from=127 to=237 evalue=5.5e-06)
ACD20_14_19

Not on your lists

comp(15859..16170)
DNA (312bp) protein (104aa)
15859..16170 - (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04694.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_20

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comp(16499..16687)
DNA (189bp) protein (63aa)
Ribbon-helix-helix (db=superfamily db_id=SSF47598 from=1 to=47 evalue=8.1e-07 interpro_id=IPR010985 interpro_description=Ribbon-helix-helix GO=Biological Process: regulation of transcription (GO:0045449))
RHH_1 (db=HMMPfam db_id=PF01402 from=4 to=38 evalue=3.3e-05 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Uncharacterized protein {ECO:0000313|EMBL:EKE04695.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_14_21

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comp(16824..18920)
DNA (2097bp) protein (699aa)
penicillin-binding protein
penicillin-binding protein
Penicillin-binding protein, 1A family n=5 Tax=Veillonella RepID=D1BMY8_VEIPT (db=UNIREF evalue=3.0e-129 bit_score=466.0 identity=42.51 coverage=85.8369098712446)
seg (db=Seg db_id=seg from=566 to=580)
ACD20_14_22

Not on your lists

comp(19123..19698)
DNA (576bp) protein (192aa)
putative metalloprotease (EC:3.4.24.-)
seg (db=Seg db_id=seg from=7 to=22)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=30 to=157 evalue=2.1e-41 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
PEPTIDASE-RELATED (db=HMMPanther db_id=PTHR21666 from=35 to=157 evalue=2.6e-29)
ACD20_14_23

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19902..20318
DNA (417bp) protein (139aa)
hypothetical protein
UPF0153 (db=HMMPfam db_id=PF03692 from=33 to=108 evalue=3.7e-07 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
hypothetical protein; K06940 alias=ACD20_C00014G00023,ACD20_11235.20382.14G0023,ACD20_11235.20382.14_23 id=18150 tax=ACD20 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE04698.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 23 items

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