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ACD20_28

Alias: ACD20_24714.10868.14

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_28_1

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1..162
DNA (162bp) protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKE03820.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_2

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comp(213..1166)
DNA (954bp) protein (318aa)
flgL; flagellar hook-associated protein FlgL
coiled-coil (db=Coil db_id=coil from=62 to=83 evalue=NA)
coiled-coil (db=Coil db_id=coil from=226 to=247 evalue=NA)
coiled-coil (db=Coil db_id=coil from=254 to=282 evalue=NA)
ACD20_28_3

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comp(1198..2736)
DNA (1539bp) protein (513aa)
flgK; flagellar hook protein 1
seg (db=Seg db_id=seg from=14 to=33)
seg (db=Seg db_id=seg from=48 to=56)
seg (db=Seg db_id=seg from=217 to=227)
ACD20_28_4

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comp(2785..3279)
DNA (495bp) protein (165aa)
seg (db=Seg db_id=seg from=4 to=17)
seg (db=Seg db_id=seg from=77 to=92)
seg (db=Seg db_id=seg from=149 to=154)
coiled-coil (db=Coil db_id=coil from=92 to=120 evalue=NA)
ACD20_28_5

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comp(3318..3653)
DNA (336bp) protein (112aa)
coiled-coil (db=Coil db_id=coil from=46 to=67 evalue=NA)
seg (db=Seg db_id=seg from=50 to=63)
Uncharacterized protein {ECO:0000313|EMBL:EKE03824.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_6

Not on your lists

comp(3736..4068)
DNA (333bp) protein (111aa)
cell envelope rod binding protein
Rod-binding (db=HMMPfam db_id=PF10135 from=57 to=105 evalue=1.3e-13 interpro_id=IPR019301 interpro_description=Flagellar protein FlgJ, N-terminal)
Q4HES0_CAMCO_Q4HES0; (db=BlastProDom db_id=PD351196 from=31 to=109 evalue=0.0001)
Uncharacterized protein {ECO:0000313|EMBL:EKE03825.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_7

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comp(4090..5193)
DNA (1104bp) protein (368aa)
flgI; flagellar basal body P-ring protein
Strongly similar to flagellar P-ring protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUI3_9BACT (db=UNIREF evalue=2.0e-72 bit_score=276.0 identity=46.84 coverage=92.3913043478261)
seg (db=Seg db_id=seg from=44 to=56)
seg (db=Seg db_id=seg from=4 to=15)
ACD20_28_8

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comp(5229..5879)
DNA (651bp) protein (217aa)
flgH; flagellar protein of basal-body outer-membrane L ring
seg (db=Seg db_id=seg from=8 to=19)
FlgH (db=HMMPfam db_id=PF02107 from=36 to=214 evalue=3.1e-30 interpro_id=IPR000527 interpro_description=Flagellar L-ring protein GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Cellular Component: bacterial-type flagellum basal body, distal rod, L ring (GO:0009427))
FLGLRINGFLGH (db=FPrintScan db_id=PR01008 from=132 to=147 evalue=2.5e-09 interpro_id=IPR000527 interpro_description=Flagellar L-ring protein GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Cellular Component: bacterial-type flagellum basal body, distal rod, L ring (GO:0009427))
ACD20_28_9

Not on your lists

comp(5889..6602)
DNA (714bp) protein (238aa)
flagella basal body P-ring formation protein FlgA
flgA_cterm: flagella basal body P-ring for (db=HMMTigr db_id=TIGR03170 from=100 to=236 evalue=5.0e-20 interpro_id=IPR017585 interpro_description=Flagella basal body P-ring formation protein FlgA)
flagella basal body P-ring formation protein FlgA; K02386 flagella basal body P-ring formation protein FlgA alias=ACD20_C00028G00009,ACD20_24714.10868.14G0009,ACD20_24714.10868.14_9 id=18507 tax=ACD20 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_10

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comp(6642..7427)
DNA (786bp) protein (262aa)
flagellar basal-body rod protein FlgG
flagellar basal-body rod protein FlgG
FLAGELLA_BB_ROD (db=PatternScan db_id=PS00588 from=11 to=31 evalue=0.0 interpro_id=IPR019776 interpro_description=Flagellar basal body rod protein, conserved site GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
flgG_G_neg: flagellar basal-body rod pr (db=HMMTigr db_id=TIGR02488 from=4 to=261 evalue=4.2e-136 interpro_id=IPR012834 interpro_description=Flagellar basal-body rod FlgG GO=Biological Process: cellular component movement (GO:0006928), Cellular Component: bacterial-type flagellum basal body, distal rod (GO:0009426), Biological Process: flagellum organization (GO:0043064))
ACD20_28_11

Not on your lists

comp(7461..8240)
DNA (780bp) protein (260aa)
flagellar basal body rod protein
FLAGELLA_BB_ROD (db=PatternScan db_id=PS00588 from=11 to=31 evalue=0.0 interpro_id=IPR019776 interpro_description=Flagellar basal body rod protein, conserved site GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
FlgEFG_subfam: fagellar hook-basal body (db=HMMTigr db_id=TIGR03506 from=3 to=236 evalue=5.2e-63 interpro_id=IPR020013 interpro_description=Fagellar hook-basal body protein, FlgE/F/G)
Flagellar hook protein flgE (db=superfamily db_id=SSF117143 from=91 to=215 evalue=1.2e-23)
ACD20_28_12

Not on your lists

comp(8267..8851)
DNA (585bp) protein (195aa)
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
TRANSGLYCOSYLASE (db=PatternScan db_id=PS00922 from=90 to=118 evalue=0.0 interpro_id=IPR000189 interpro_description=Prokaryotic transglycosylase, active site)
Lysozyme-like (db=superfamily db_id=SSF53955 from=53 to=194 evalue=2.1e-46)
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=68 to=191 evalue=4.4e-44)
ACD20_28_13

Not on your lists

9162..9788
DNA (627bp) protein (209aa)
9162..9788 + (rbs_motif=4Base/6BMM rbs_spacer=13-15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03832.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_14

Not on your lists

comp(9792..10181)
DNA (390bp) protein (130aa)
9792..10181 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03833.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_28_15

Not on your lists

comp(10197..10640)
DNA (444bp) protein (148aa)
10197..10640 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03834.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 15 items

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