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ACD20_35

Alias: ACD20_32734.42697.14

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_35_1

Not on your lists

comp(377..1063)
DNA (687bp) protein (229aa)
PP-loop superfamily ATPase
seg (db=Seg db_id=seg from=7 to=18)
Uncharacterised conserved protein, ExsB type (db=HMMPIR db_id=PIRSF006293 from=1 to=226 evalue=3.3e-62 interpro_id=IPR004479 interpro_description=Exoenzyme S synthesis protein B/queuosine synthesis GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
TIGR00364: exsB protein (db=HMMTigr db_id=TIGR00364 from=4 to=210 evalue=8.7e-59 interpro_id=IPR004479 interpro_description=Exoenzyme S synthesis protein B/queuosine synthesis GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD20_35_2

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comp(1056..2024)
DNA (969bp) protein (323aa)
PBS lyase heat domain-containing protein repeat-containing protein (db=KEGG evalue=5.0e-19 bit_score=98.6 identity=34.2 coverage=62.5386996904025)
seg (db=Seg db_id=seg from=2 to=16)
seg (db=Seg db_id=seg from=302 to=322)
coiled-coil (db=Coil db_id=coil from=300 to=321 evalue=NA)
ACD20_35_3

Not on your lists

comp(2438..2656)
DNA (219bp) protein (73aa)
XRE family transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=72 evalue=4.0e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=9 to=71 evalue=3.8e-15)
no description (db=HMMSmart db_id=SM00530 from=12 to=67 evalue=4.4e-15 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD20_35_4

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2725..2919
DNA (195bp) protein (65aa)
2725..2919 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03391.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_5

Not on your lists

3063..4505
DNA (1443bp) protein (481aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=36)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=26 to=464 evalue=2.2e-27 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=31 to=464 evalue=1.5e-25)
ACD20_35_6

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comp(4584..4940)
DNA (357bp) protein (119aa)
cell division topological specificity factor MinE
MinE (db=HMMPfam db_id=PF03776 from=49 to=115 evalue=1.3e-21 interpro_id=IPR005527 interpro_description=Septum formation topological specificity factor MinE GO=Biological Process: regulation of barrier septum formation (GO:0032955), Biological Process: cell division (GO:0051301))
minE: cell division topological specificity (db=HMMTigr db_id=TIGR01215 from=35 to=116 evalue=9.3e-20 interpro_id=IPR005527 interpro_description=Septum formation topological specificity factor MinE GO=Biological Process: regulation of barrier septum formation (GO:0032955), Biological Process: cell division (GO:0051301))
Cell division protein MinE topological specificity domain (db=superfamily db_id=SSF55229 from=65 to=116 evalue=6.7e-12)
ACD20_35_7

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comp(4959..5768)
DNA (810bp) protein (270aa)
septum site-determining protein MinD
septum site-determining protein MinD
Septum site-determining protein MinD n=2 Tax=Desulfitobacterium hafniense RepID=B8FUT1_DESHD (db=UNIREF evalue=1.0e-79 bit_score=300.0 identity=60.33 coverage=88.8888888888889)
seg (db=Seg db_id=seg from=189 to=194)
ACD20_35_8

Not on your lists

comp(5787..6599)
DNA (813bp) protein (271aa)
Probable septum site-determining protein minC n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEW0_9FIRM (db=UNIREF evalue=2.0e-22 bit_score=109.0 identity=44.96 coverage=42.8044280442804)
minC; septum site-determining protein minc
Cell-division inhibitor MinC, C-terminal domain (db=superfamily db_id=SSF63848 from=157 to=269 evalue=8.0e-27 interpro_id=IPR005526 interpro_description=Septum formation inhibitor MinC, C-terminal)
no description (db=Gene3D db_id=G3DSA:2.160.20.70 from=158 to=268 evalue=1.0e-22 interpro_id=IPR016098 interpro_description=Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)
ACD20_35_9

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7103..8899
DNA (1797bp) protein (599aa)
N-acetylmuramoyl-L-alanine amidase
seg (db=Seg db_id=seg from=298 to=316)
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=415 to=593 evalue=2.0e-49)
no description (db=Gene3D db_id=G3DSA:3.40.630.40 from=415 to=592 evalue=8.0e-46 interpro_id=IPR002508 interpro_description=Cell wall hydrolase/autolysin, catalytic GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
ACD20_35_10

Not on your lists

8988..9269
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=55 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKE03397.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_11

Not on your lists

9562..10455
DNA (894bp) protein (298aa)
hypothetical protein
hypothetical protein alias=ACD20_32734.42697.14G0011,ACD20_32734.42697.14_11,ACD20_C00035G00011 id=18751 tax=ACD20 species=Bordetella bronchiseptica genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03398.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_12

Not on your lists

comp(10432..11304)
DNA (873bp) protein (291aa)
hypothetical protein
seg (db=Seg db_id=seg from=9 to=18)
DUF1814 (db=HMMPfam db_id=PF08843 from=14 to=258 evalue=2.2e-23 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
hypothetical protein alias=ACD20_32734.42697.14G0012,ACD20_32734.42697.14_12,ACD20_C00035G00012 id=18738 tax=ACD20 species=Bordetella bronchiseptica genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_35_13

Not on your lists

comp(11870..12085)
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=41 to=58)
Uncharacterized protein {ECO:0000313|EMBL:EKE03400.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_14

Not on your lists

12386..15829
DNA (3444bp) protein (1148aa)
DNA polymerase III, alpha subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D017_PELTS (db=UNIREF evalue=0.0 bit_score=1127.0 identity=48.77 coverage=97.3867595818815)
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
seg (db=Seg db_id=seg from=843 to=852)
ACD20_35_15

Not on your lists

16782..17378
DNA (597bp) protein (199aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IRR0_9CHRO (db=UNIREF evalue=9.0e-44 bit_score=179.0 identity=46.63 coverage=95.9798994974874)
PEPT_TRNA_HYDROL_2 (db=PatternScan db_id=PS01196 from=108 to=118 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
pth: peptidyl-tRNA hydrolase (db=HMMTigr db_id=TIGR00447 from=1 to=188 evalue=6.4e-74 interpro_id=IPR001328 interpro_description=Peptidyl-tRNA hydrolase GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
ACD20_35_16

Not on your lists

17583..17942
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
Uncharacterized protein {ECO:0000313|EMBL:EKE03382.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_17

Not on your lists

17947..18456
DNA (510bp) protein (170aa)
RNA polymerase sigma-70 factor n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR3_9GAMM (db=UNIREF evalue=6.0e-25 bit_score=116.0 identity=34.48 coverage=97.0588235294118)
RNA polymerase, sigma-24 subunit, RpoE
coiled-coil (db=Coil db_id=coil from=18 to=39 evalue=NA)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=5 to=164 evalue=6.8e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD20_35_18

Not on your lists

18475..18963
DNA (489bp) protein (163aa)
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
Putative uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IR12_9CHRO (db=UNIREF evalue=2.0e-09 bit_score=64.7 identity=36.26 coverage=55.2147239263804)
seg (db=Seg db_id=seg from=135 to=146)
coiled-coil (db=Coil db_id=coil from=141 to=162 evalue=NA)
ACD20_35_19

Not on your lists

19063..19497
DNA (435bp) protein (145aa)
coiled-coil (db=Coil db_id=coil from=79 to=126 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE03385.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_35_20

Not on your lists

19602..20951
DNA (1350bp) protein (450aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Lysinibacillus sphaericus RepID=BIOA_BACSH (db=UNIREF evalue=1.0e-147 bit_score=526.0 identity=52.73 coverage=97.3333333333333)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=252 to=289 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD20_35_21

Not on your lists

21012..21221
DNA (210bp) protein (70aa)
thiamine biosynthesis protein ThiS
thiS: thiamine biosynthesis protein ThiS (db=HMMTigr db_id=TIGR01683 from=6 to=69 evalue=1.3e-19 interpro_id=IPR010035 interpro_description=ThiS, thiamine-biosynthesis)
MoaD/ThiS (db=superfamily db_id=SSF54285 from=5 to=68 evalue=4.5e-17 interpro_id=IPR016155 interpro_description=Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp)
no description (db=Gene3D db_id=G3DSA:3.10.20.30 from=4 to=69 evalue=2.0e-14 interpro_id=IPR012675 interpro_description=Beta-grasp fold, ferredoxin-type)
ACD20_35_22

Not on your lists

comp(21309..21635)
DNA (327bp) protein (109aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=76 to=100)
ACD20_35_23

Not on your lists

comp(21736..22248)
DNA (513bp) protein (171aa)
ferritin
seg (db=Seg db_id=seg from=19 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
FERRITIN (db=HMMPanther db_id=PTHR11431:SF4 from=1 to=161 evalue=6.2e-78)
ACD20_35_24

Not on your lists

comp(22596..23000)
DNA (405bp) protein (135aa)
protein-tyrosine phosphatase, low molecular weight
no description (db=HMMSmart db_id=SM00226 from=3 to=134 evalue=3.7e-47 interpro_id=IPR017867 interpro_description=Protein-tyrosine phosphatase, low molecular weight GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725), Biological Process: protein amino acid dephosphorylation (GO:0006470))
no description (db=Gene3D db_id=G3DSA:3.40.50.270 from=2 to=133 evalue=1.0e-44)
Phosphotyrosine protein phosphatases I (db=superfamily db_id=SSF52788 from=1 to=134 evalue=6.3e-43 interpro_id=IPR017867 interpro_description=Protein-tyrosine phosphatase, low molecular weight GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725), Biological Process: protein amino acid dephosphorylation (GO:0006470))
ACD20_35_25

Not on your lists

comp(23012..24061)
DNA (1050bp) protein (350aa)
arsenical-resistance protein
arsenical-resistance protein
Arsenical-resistance protein n=3 Tax=Geobacter RepID=A5GCL1_GEOUR (db=UNIREF evalue=1.0e-124 bit_score=449.0 identity=72.33 coverage=98.8571428571429)
seg (db=Seg db_id=seg from=302 to=317)
ACD20_35_26

Not on your lists

comp(24086..24868)
DNA (783bp) protein (261aa)
arsenite methyltransferase (EC:2.1.1.137) rbh
arsenite methyltransferase (EC:2.1.1.137) rbh
seg (db=Seg db_id=seg from=242 to=248)
ARSENITE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108:SF11 from=68 to=233 evalue=3.7e-54)
ACD20_35_27

Not on your lists

24988..25317
DNA (330bp) protein (110aa)
ArsR family transcriptional regulator
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=102 evalue=8.5e-22)
no description (db=HMMSmart db_id=SM00418 from=11 to=85 evalue=5.5e-20 interpro_id=IPR001845 interpro_description=HTH transcriptional regulator, ArsR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=99 evalue=9.4e-19 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ArsR is part of As-resistance region Jill Banfield (11/15/12)
ACD20_35_28

Not on your lists

25317..25550
DNA (234bp) protein (78aa)
Redox-active disulfide protein 2
coiled-coil (db=Coil db_id=coil from=10 to=38 evalue=NA)
Predicted redox-active disulfide protein 2 (db=HMMPIR db_id=PIRSF037031 from=1 to=77 evalue=9.2e-43 interpro_id=IPR005243 interpro_description=Redox-active disulphide protein 2)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=1 to=76 evalue=3.5e-24 interpro_id=IPR012335 interpro_description=Thioredoxin fold)
ACD20_35_29

Not on your lists

25554..26528
DNA (975bp) protein (325aa)
permease
seg (db=Seg db_id=seg from=39 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
transmembrane_regions (db=TMHMM db_id=tmhmm from=270 to=292)
ACD20_35_30

Not on your lists

26583..27542
DNA (960bp) protein (320aa)
putative permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=135 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=221)
Displaying items 1-30 of 45 in total

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