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ACD20_56

Alias: ACD20_14657.24331.13

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_56_1

Not on your lists

comp(38..592)
DNA (555bp) protein (185aa)
seg (db=Seg db_id=seg from=126 to=140)
seg (db=Seg db_id=seg from=9 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
ACD20_56_2

Not on your lists

comp(628..2316)
DNA (1689bp) protein (563aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=359 to=381)
seg (db=Seg db_id=seg from=299 to=311)
seg (db=Seg db_id=seg from=543 to=558)
Uncharacterized protein {ECO:0000313|EMBL:EKE04489.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_56_3

Not on your lists

2495..3409
DNA (915bp) protein (305aa)
Quinolinate synthase A n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=NADA_ALKMQ (db=UNIREF evalue=4.0e-98 bit_score=361.0 identity=56.62 coverage=98.6885245901639)
quinolinate synthetase complex subunit A (EC:2.1.1.63)
quinolinate synthetase complex subunit A (EC:2.1.1.63)
NadA (db=HMMPfam db_id=PF02445 from=8 to=302 evalue=7.5e-119 interpro_id=IPR003473 interpro_description=Quinolinate synthetase A GO=Molecular Function: quinolinate synthetase A activity (GO:0008987), Biological Process: NAD biosynthetic process (GO:0009435))
ACD20_56_4

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comp(3521..4837)
DNA (1317bp) protein (439aa)
solute-binding protein
solute-binding protein
Extracellular solute-binding protein family 1 n=1 Tax='Nostoc azollae' 0708 RepID=B9YHZ5_ANAAZ (db=UNIREF evalue=1.0e-89 bit_score=333.0 identity=42.32 coverage=89.2938496583143)
seg (db=Seg db_id=seg from=19 to=35)
ACD20_56_5

Not on your lists

comp(5028..5276)
DNA (249bp) protein (83aa)
5028..5276 - (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04492.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_56_6

Not on your lists

comp(5269..5889)
DNA (621bp) protein (207aa)
lipoyltransferase
LIPB (db=PatternScan db_id=PS01313 from=67 to=82 evalue=0.0 interpro_id=IPR020605 interpro_description=Octanoyltransferase, conserved site GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: lipoate biosynthetic process (GO:0009107), Molecular Function: octanoyltransferase activity (GO:0016415))
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=2 to=205 evalue=7.6e-62)
lipB: lipoyl(octanoyl) transferase (db=HMMTigr db_id=TIGR00214 from=22 to=201 evalue=3.3e-51 interpro_id=IPR000544 interpro_description=Octanoyltransferase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: lipoate biosynthetic process (GO:0009107), Molecular Function: octanoyltransferase activity (GO:0016415))
ACD20_56_7

Not on your lists

comp(6073..7710)
DNA (1638bp) protein (546aa)
D-3-phosphoglycerate dehydrogenase n=2 Tax=Brachyspira RepID=C0QYX0_BRAHW (db=UNIREF evalue=7.0e-163 bit_score=577.0 identity=53.64 coverage=97.4358974358974)
D-3-phosphoglycerate dehydrogenase
D-3-phosphoglycerate dehydrogenase
D_2_HYDROXYACID_DH_2 (db=PatternScan db_id=PS00670 from=191 to=213 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD20_56_8

Not on your lists

7914..8612
DNA (699bp) protein (233aa)
hypothetical protein; K06966 (db=KEGG evalue=5.0e-08 bit_score=61.2 identity=28.33 coverage=71.6738197424893)
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=38 to=231 evalue=1.3e-19)
no description (db=Gene3D db_id=G3DSA:3.40.50.450 from=42 to=227 evalue=1.5e-15)
Lysine_decarbox (db=HMMPfam db_id=PF03641 from=129 to=226 evalue=1.3e-10 interpro_id=IPR005269 interpro_description=Conserved hypothetical protein CHP00730)
ACD20_56_9

Not on your lists

comp(8865..10019)
DNA (1155bp) protein (385aa)
Serine-pyruvate/aspartate aminotransferase related enzyme n=2 Tax=Brachyspira RepID=C0QYX1_BRAHW (db=UNIREF evalue=3.0e-145 bit_score=518.0 identity=64.81 coverage=97.4025974025974)
Serine-pyruvate/aspartate aminotransferase related enzyme
Serine-pyruvate/aspartate aminotransferase related enzyme
AA_TRANSFER_CLASS_5 (db=PatternScan db_id=PS00595 from=184 to=204 evalue=0.0 interpro_id=IPR020578 interpro_description=Aminotransferase class-V pyridoxal-phosphate binding site)
ACD20_56_10

Not on your lists

comp(10009..11301)
DNA (1293bp) protein (431aa)
GTP-binding protein Obg/CgtA
GTP-binding protein Obg/CgtA
UPI0001D5AC94 related cluster n=1 Tax=unknown RepID=UPI0001D5AC94 (db=UNIREF evalue=4.0e-105 bit_score=385.0 identity=52.13 coverage=96.7517401392111)
seg (db=Seg db_id=seg from=31 to=42)
ACD20_56_11

Not on your lists

11529..12425
DNA (897bp) protein (299aa)
metalloendopeptidase-like membrane protein
seg (db=Seg db_id=seg from=3 to=16)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=169 to=289 evalue=5.5e-41 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
ACD20_56_12

Not on your lists

comp(12422..12835)
DNA (414bp) protein (138aa)
12422..12835 - (rbs_motif=GGA/GAG/AGG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04499.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_56_13

Not on your lists

comp(13053..13853)
DNA (801bp) protein (267aa)
Indole-3-glycerol phosphate synthase
Indole-3-glycerol phosphate synthase n=3 Tax=Neisseria RepID=C5TK96_NEIFL (db=UNIREF evalue=1.0e-57 bit_score=226.0 identity=46.85 coverage=93.2584269662921)
seg (db=Seg db_id=seg from=184 to=195)
IGPS (db=PatternScan db_id=PS00614 from=57 to=75 evalue=0.0 interpro_id=IPR001468 interpro_description=Indole-3-glycerol phosphate synthase, conserved site GO=Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425), Biological Process: tryptophan metabolic process (GO:0006568))
ACD20_56_14

Not on your lists

comp(13837..14238)
DNA (402bp) protein (134aa)
seg (db=Seg db_id=seg from=19 to=30)
seg (db=Seg db_id=seg from=115 to=127)
Uncharacterized protein {ECO:0000313|EMBL:EKE04501.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_56_15

Not on your lists

comp(14569..14844)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQZ6_9SYNE (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=59.34 coverage=97.8260869565217)
nucleoid protein Hbs
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=1.4e-41 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
ACD20_56_16

Not on your lists

16001..16813
DNA (813bp) protein (271aa)
ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.163)
UBIE_2 (db=PatternScan db_id=PS01184 from=179 to=193 evalue=0.0 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
MenG_MenH_UbiE: ubiquinone/menaquinone (db=HMMTigr db_id=TIGR01934 from=49 to=270 evalue=7.7e-80 interpro_id=IPR004033 interpro_description=UbiE/COQ5 methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=41 to=267 evalue=7.2e-67)
cytoplasmic kelly wrighton (11/15/12)
ACD20_56_17

Not on your lists

16824..17789
DNA (966bp) protein (322aa)
Alcohol dehydrogenase GroES domain protein
seg (db=Seg db_id=seg from=82 to=93)
seg (db=Seg db_id=seg from=158 to=178)
seg (db=Seg db_id=seg from=134 to=147)
ACD20_56_18

Not on your lists

comp(17769..17942)
DNA (174bp) protein (58aa)
17769..17942 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04482.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_56_19

Not on your lists

18363..19706
DNA (1344bp) protein (448aa)
RND family efflux transporter MFP subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=35)
seg (db=Seg db_id=seg from=231 to=245)
seg (db=Seg db_id=seg from=128 to=142)
ACD20_56_20

Not on your lists

19710..20951
DNA (1242bp) protein (414aa)
lolC; lipoprotein releasing system transmembrane protein lolC
seg (db=Seg db_id=seg from=136 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=346)
ACD20_56_21

Not on your lists

20944..21639
DNA (696bp) protein (232aa)
lolD; ABC-type antimicrobial peptide transport system, ATPase component LolD (EC:3.6.3.-)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=6 to=231 evalue=1.5e-96)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=231 evalue=1.5e-96)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=8 to=223 evalue=9.1e-61)
ACD20_56_22

Not on your lists

comp(21646..23301)
DNA (1656bp) protein (552aa)
yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase
coiled-coil (db=Coil db_id=coil from=193 to=214 evalue=NA)
seg (db=Seg db_id=seg from=436 to=451)
5'-NUCLEOTIDASE-RELATED (db=HMMPanther db_id=PTHR11575 from=83 to=522 evalue=3.7e-56 interpro_id=IPR006179 interpro_description=5'-Nucleotidase/apyrase GO=Biological Process: nucleotide catabolic process (GO:0009166), Molecular Function: hydrolase activity (GO:0016787))
ACD20_56_23

Not on your lists

comp(23488..24204)
DNA (717bp) protein (239aa)
23488..24204 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04487.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 23 items

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