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ACD20_121

Alias: ACD20_1962.42504.14

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_121_1

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2..223
DNA (222bp) protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
seg (db=Seg db_id=seg from=27 to=45)
Uncharacterized protein {ECO:0000313|EMBL:EKE04046.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_2

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comp(599..2032)
DNA (1434bp) protein (478aa)
599..2032 - (rbs_motif=AGGAG/GGAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04047.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_3

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comp(2280..4334)
DNA (2055bp) protein (685aa)
Alpha-amylase family protein n=1 Tax=Methanosarcina acetivorans RepID=Q8TQA8_METAC (db=UNIREF evalue=0.0 bit_score=742.0 identity=55.88 coverage=92.1167883211679)
alpha-amylase
alpha-amylase
seg (db=Seg db_id=seg from=9 to=17)
Predicted (9.45/10) to be extracellular. Has 2 internal helices. kelly wrighton (11/15/12)
ACD20_121_4

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4634..7300
DNA (2667bp) protein (889aa)
Valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RL27_MOOTA (db=UNIREF evalue=0.0 bit_score=943.0 identity=53.09 coverage=98.6501687289089)
coiled-coil (db=Coil db_id=coil from=862 to=883 evalue=NA)
ACD20_121_5

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7311..8615
DNA (1305bp) protein (435aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
FolC bifunctional protein n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5QZA2_9FIRM (db=UNIREF evalue=7.0e-77 bit_score=291.0 identity=39.86 coverage=95.4022988505747)
seg (db=Seg db_id=seg from=167 to=177)
FOLYLPOLYGLU_SYNT_1 (db=PatternScan db_id=PS01011 from=54 to=77 evalue=0.0 interpro_id=IPR018109 interpro_description=Folylpolyglutamate synthetase, conserved site GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD20_121_6

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8805..9482
DNA (678bp) protein (226aa)
LuxR family two component transcriptional regulator
seg (db=Seg db_id=seg from=5 to=15)
CheY-like (db=superfamily db_id=SSF52172 from=6 to=199 evalue=1.6e-31 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=9 to=122 evalue=3.2e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_121_7

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comp(9631..10566)
DNA (936bp) protein (312aa)
dolichol monophosphate mannose synthase
dolichol monophosphate mannose synthase
Glycosyl transferase family 2 n=2 Tax=Burkholderia ambifaria RepID=B1YUC4_BURA4 (db=UNIREF evalue=1.0e-111 bit_score=405.0 identity=62.9 coverage=98.3974358974359)
transmembrane_regions (db=TMHMM db_id=tmhmm from=231 to=253)
ACD20_121_8

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comp(10563..10931)
DNA (369bp) protein (123aa)
gtra family protein
GtrA family protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PHF8_9PROT (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=57.14 coverage=95.1219512195122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=112)
ACD20_121_9

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comp(10931..12736)
DNA (1806bp) protein (602aa)
Thiamine pyrophosphate protein domain protein TPP-binding n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5QZK1_9FIRM (db=UNIREF evalue=0.0 bit_score=704.0 identity=55.02 coverage=98.671096345515)
acetolactate synthase (EC:2.2.1.6)
acetolactate synthase (EC:2.2.1.6)
THIAMINE PYROPHOSPHATE ENZYMES (db=HMMPanther db_id=PTHR18968 from=242 to=553 evalue=6.8e-66)
ACD20_121_10

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comp(12733..13890)
DNA (1158bp) protein (386aa)
hypothetical protein
FkbM family methyltransferase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V641_9FIRM (db=UNIREF evalue=5.0e-46 bit_score=189.0 identity=35.67 coverage=89.3782383419689)
seg (db=Seg db_id=seg from=49 to=60)
fkbM_fam: methyltransferase, FkbM family (db=HMMTigr db_id=TIGR01444 from=209 to=339 evalue=2.0e-19 interpro_id=IPR006342 interpro_description=Methyltransferase FkbM)
ACD20_121_11

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comp(13950..15044)
DNA (1095bp) protein (365aa)
N-acetylneuraminic acid synthase
N-acetylneuraminic acid synthase
N-acetylneuraminate synthase n=1 Tax=Pseudomonas putida F1 RepID=A5W0I0_PSEP1 (db=UNIREF evalue=3.0e-126 bit_score=455.0 identity=57.73 coverage=97.8082191780822)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=14 to=301 evalue=7.3e-53 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD20_121_12

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comp(15171..16052)
DNA (882bp) protein (294aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Geobacter lovleyi SZ RepID=B3E4J6_GEOLS (db=UNIREF evalue=1.0e-98 bit_score=362.0 identity=57.68 coverage=98.9795918367347)
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=278 evalue=2.6e-37)
ACD20_121_13

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comp(16129..17106)
DNA (978bp) protein (326aa)
4Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NN29_9DELT (db=UNIREF evalue=1.0e-52 bit_score=210.0 identity=37.1 coverage=97.8527607361963)
hycB; ferredoxin
seg (db=Seg db_id=seg from=199 to=214)
LdpA_C (db=HMMPfam db_id=PF12617 from=151 to=318 evalue=1.4e-30 interpro_id=IPR021039 interpro_description=Iron-sulphur binding protein LdpA, C-terminal)
ACD20_121_14

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comp(17135..19597)
DNA (2463bp) protein (821aa)
phenylalanyl-tRNA synthetase subunit beta
phenylalanyl-tRNA synthetase subunit beta
Phenylalanyl-tRNA synthetase beta chain n=1 Tax=Syntrophus aciditrophicus SB RepID=SYFB_SYNAS (db=UNIREF evalue=3.0e-152 bit_score=543.0 identity=40.1 coverage=96.2241169305725)
seg (db=Seg db_id=seg from=747 to=761)
ACD20_121_15

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comp(19616..20152)
DNA (537bp) protein (179aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=118 to=146 evalue=NA)
ORF6N (db=HMMPfam db_id=PF10543 from=11 to=98 evalue=6.8e-32 interpro_id=IPR018873 interpro_description=KilA-N, DNA-binding domain)
Uncharacterized protein {ECO:0000313|EMBL:EKE04060.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_16

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comp(20162..21196)
DNA (1035bp) protein (345aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase alpha chain n=1 Tax=Geobacter uraniireducens Rf4 RepID=SYFA_GEOUR (db=UNIREF evalue=3.0e-102 bit_score=375.0 identity=54.07 coverage=97.6811594202899)
seg (db=Seg db_id=seg from=245 to=261)
ACD20_121_17

Not on your lists

comp(21332..21985)
DNA (654bp) protein (218aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=7 to=216 evalue=6.4e-60 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=8 to=217 evalue=9.3e-58 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
N-(5-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE (db=HMMPanther db_id=PTHR22854:SF6 from=8 to=195 evalue=3.7e-48)
ACD20_121_18

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comp(22013..22642)
DNA (630bp) protein (210aa)
Similar to hydroxyacylglutathione hydrolase (Glyoxalase II) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVC6_9BACT (db=UNIREF evalue=2.0e-51 bit_score=205.0 identity=47.32 coverage=97.1428571428571)
ycbL; zinc-dependent hydrolase YcbL, metallo-beta-lactamase superfamily
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=205 evalue=4.9e-55)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=2 to=205 evalue=8.8e-53)
ACD20_121_19

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22742..23902
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GQI2_BACCN (db=UNIREF evalue=4.0e-109 bit_score=398.0 identity=53.52 coverage=98.4496124031008)
seg (db=Seg db_id=seg from=93 to=104)
ACD20_121_20

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23941..24528
DNA (588bp) protein (196aa)
hypothetical protein
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=5 to=183 evalue=1.1e-62)
no description (db=Gene3D db_id=G3DSA:3.40.50.450 from=4 to=194 evalue=4.9e-57)
TIGR00730: conserved hypothetical protein T (db=HMMTigr db_id=TIGR00730 from=5 to=182 evalue=7.0e-50 interpro_id=IPR005269 interpro_description=Conserved hypothetical protein CHP00730)
ACD20_121_21

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comp(24530..25441)
DNA (912bp) protein (304aa)
uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (db=KEGG evalue=1.0e-09 bit_score=67.4 identity=29.86 coverage=62.171052631579)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=93 to=299 evalue=2.3e-18)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=93 to=298 evalue=2.0e-15)
URIDINE KINASE RELATED (db=HMMPanther db_id=PTHR10285 from=103 to=234 evalue=4.7e-08)
ACD20_121_22

Not on your lists

25694..27334
DNA (1641bp) protein (547aa)
thiamine pyrophosphate dependent decarboxylase, pyruvate decarboxylase
thiamine pyrophosphate dependent decarboxylase, pyruvate decarboxylase
Indole-3-pyruvate decarboxylase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C7C4_9PLAN (db=UNIREF evalue=3.0e-139 bit_score=499.0 identity=46.4 coverage=98.1718464351005)
seg (db=Seg db_id=seg from=482 to=499)
Tryptophan metabolism Jill Banfield (11/15/12)
likely involved in membrane energetics- decarboxylation kelly wrighton (11/15/12)
cytoplasmic kelly wrighton (11/15/12)
ACD20_121_23

Not on your lists

27443..27826
DNA (384bp) protein (128aa)
seg (db=Seg db_id=seg from=37 to=50)
seg (db=Seg db_id=seg from=5 to=13)
Uncharacterized protein {ECO:0000313|EMBL:EKE04068.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_24

Not on your lists

28194..28349
DNA (156bp) protein (52aa)
28194..28349 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04069.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_25

Not on your lists

comp(28443..29444)
DNA (1002bp) protein (334aa)
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YNQ3_9CYAN (db=UNIREF evalue=2.0e-50 bit_score=203.0 identity=36.17 coverage=95.8083832335329)
seg (db=Seg db_id=seg from=218 to=228)
GSH-S_ATP (db=HMMPfam db_id=PF02955 from=131 to=307 evalue=5.0e-54 interpro_id=IPR004218 interpro_description=Prokaryotic glutathione synthetase, ATP-binding GO=Molecular Function: glutathione synthase activity (GO:0004363), Molecular Function: ATP binding (GO:0005524), Biological Process: glutathione biosynthetic process (GO:0006750))
ACD20_121_26

Not on your lists

comp(29595..30182)
DNA (588bp) protein (196aa)
29595..30182 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04071.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_121_27

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30527..31372
DNA (846bp) protein (282aa)
Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WFH8_9SYNE (db=UNIREF evalue=7.0e-77 bit_score=290.0 identity=49.45 coverage=95.3900709219858)
hypothetical protein
AMIDINO TRANSFERASE RELATED (db=HMMPanther db_id=PTHR12737:SF1 from=23 to=281 evalue=1.6e-99)
DIMETHYLARGININE DIMETHYLAMINOHYDROLASE (db=HMMPanther db_id=PTHR12737 from=23 to=281 evalue=1.6e-99)
ACD20_121_28

Not on your lists

comp(31561..32136)
DNA (576bp) protein (192aa)
carbonic anhydrase
PROK_CO2_ANHYDRASE_1 (db=PatternScan db_id=PS00704 from=48 to=55 evalue=0.0 interpro_id=IPR015892 interpro_description=Carbonic anhydrase, prokaryotic-like, conserved site GO=Molecular Function: carbonate dehydratase activity (GO:0004089), Molecular Function: zinc ion binding (GO:0008270), Biological Process: carbon utilization (GO:0015976))
beta-carbonic anhydrase, cab (db=superfamily db_id=SSF53056 from=1 to=190 evalue=2.5e-45 interpro_id=IPR001765 interpro_description=Carbonic anhydrase GO=Molecular Function: carbonate dehydratase activity (GO:0004089), Molecular Function: zinc ion binding (GO:0008270), Biological Process: carbon utilization (GO:0015976))
no description (db=Gene3D db_id=G3DSA:3.40.1050.10 from=1 to=191 evalue=5.9e-40 interpro_id=IPR001765 interpro_description=Carbonic anhydrase GO=Molecular Function: carbonate dehydratase activity (GO:0004089), Molecular Function: zinc ion binding (GO:0008270), Biological Process: carbon utilization (GO:0015976))
ACD20_121_29

Not on your lists

comp(32535..34067)
DNA (1533bp) protein (511aa)
alkaline phosphatase
alkaline phosphatase
Alkaline phosphatase n=1 Tax=Geobacter lovleyi SZ RepID=B3E3B1_GEOLS (db=UNIREF evalue=9.0e-120 bit_score=434.0 identity=44.72 coverage=97.4559686888454)
seg (db=Seg db_id=seg from=142 to=154)
ACD20_121_30

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34287..35732
DNA (1446bp) protein (482aa)
l-2,4-diaminobutyrate decarboxylase rbh
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=16 to=481 evalue=2.2e-112 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
no description (db=Gene3D db_id=G3DSA:3.40.640.10 from=97 to=384 evalue=6.8e-79 interpro_id=IPR015421 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Pyridoxal_deC (db=HMMPfam db_id=PF00282 from=56 to=418 evalue=3.0e-59 interpro_id=IPR002129 interpro_description=Pyridoxal phosphate-dependent decarboxylase GO=Molecular Function: carboxy-lyase activity (GO:0016831), Biological Process: carboxylic acid metabolic process (GO:0019752), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Displaying items 1-30 of 37 in total

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