ggKbase home page

13_1_20cm_3_scaffold_136061_5

Organism: 13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

partial RP 35 / 55 MC: 1 BSCG 30 / 51 ASCG 8 / 38 MC: 1
Location: 3926..4441

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 77.3
  • Coverage: 110.0
  • Bit_score: 177
  • Evalue 1.30e-41
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;" UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 126.0
  • Bit_score: 206
  • Evalue 2.80e-50
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 80.2
  • Coverage: 126.0
  • Bit_score: 206
  • Evalue 5.60e-51

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Gemmatimonadetes bacterium KBS708 → Gemmatimonadetes → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 516
ATGGCTGACATCGTCCGTAAGCAAGCAGTATCGGTTGAAGTCTTAACCGTCCGGGAACGTCTGCAGGCGATGGACGACTCAGCCGTCGTCACGGCCTTCCTTGGTGGTGAGGAACGGGCCTTTTCGGAGCTGGTTACTCGCTATCAGACACGTCTGCTCAACTTCGTCTACCGCACGATCGGTGACCGTGAGAAAGCAGAAGATCTGGTACAGGAAGTCTTCATTCGCGTGTACCGGCACCTGCATCGTTTCGACCGGTCGAAGAAGTTTTCAACCTGGGTCTATACGATTGCCTCGAACCTGGCGAAAAACGAGTTGAGAAATCGCTCACGTAATCCGCTGGTTCTCTTCCAAACGGTGCAAAAGAACTCGCAAGACGTCACCTTAGAGAGATCGTCGAGGAGAGCGTTGCCAAGCTTCCCGAGCATCACAGAAATGTTTTCATCCTCAGGGAGCTCGAAGGCAAGTCATACGAAGAGATTGCTGAAATCACCGAGTGCAATCTGGGTACGGTGA
PROTEIN sequence
Length: 172
MADIVRKQAVSVEVLTVRERLQAMDDSAVVTAFLGGEERAFSELVTRYQTRLLNFVYRTIGDREKAEDLVQEVFIRVYRHLHRFDRSKKFSTWVYTIASNLAKNELRNRSRNPLVLFQTVQKNSQDVTLERSSRRALPSFPSITEMFSSSGSSKASHTKRLLKSPSAIWVR*