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13_1_20cm_4_scaffold_33385_1

Organism: 13_1_20CM_4_Rokubacteria_70_13

partial RP 21 / 55 MC: 3 BSCG 25 / 51 MC: 3 ASCG 4 / 38 MC: 2
Location: comp(1..1308)

Top 3 Functional Annotations

Value Algorithm Source
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 435.0
  • Bit_score: 607
  • Evalue 1.40e-170
Lipid A export ATP-binding/permease protein MsbA id=4600885 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 70.6
  • Coverage: 435.0
  • Bit_score: 604
  • Evalue 1.10e-169
phospholipid-lipopolysaccharide ABC transporter similarity KEGG
DB: KEGG
  • Identity: 45.2
  • Coverage: 429.0
  • Bit_score: 384
  • Evalue 5.00e-104

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 1308
GTGACGCTGCCCATCGGCCCCTACCGCCGCCTCGTCCCGTACCTCCGCCCGCACGTCCCGATCCTGGTCCTCGGGTCCGTCCTGGCGCTCGTCGTCTCGGGCATGGAGGGCCTCACCGCGTGGCTCGTGAAGCCGGTGATGGACGACATCTTCATCCGGCGCGACACGTTCATGCTGAAGCTGATCCCGCTGGTGCTCCTCGCGGTGTACGTCGTGAAGGGGCTCGCGCGCTACCTCCAGTCGTACATGATGGCCGCCGTCGGCGAGCGGGTCGTGGCGCGCCTGCGCCGCGAGCTCTACACGCACATCCAATCCATGCCGCTCTCGTTCTTCTCGGACGTCCACTCGGCGGACCTCATGTCCCGGATCCTCACCGACGTGACCCGGCTCGCGCGGCTCTCCTCCGGCGTCCTCGTCATGGCCGTGCGTCAGCTCGGGACGATCGTGGCCCTCCTGGTCGTCATGGTCGCGCGCGAGTGGGCGCTCACCCTGACCGCCCTCGTCGCATTTCCCGCCATCGCTCTCATCGTGCGCACGATCGGCCGGCGGCTCTACTCGATCAACAAGCGCACCCAGGAGCGCGTGGCCCAGCTCGCCGTGCTGCTGCACGAGTCGTTCAGCGGGACCAAGATCGTCAAGGCGTTCGGGCGCGAGCGCCACGAGCAGGAGCGCTTCGACGCCCTCAACGACCGGCTCCTCAACCTCTCGCTCAAGAACGTGCGCGCCGACGAGCTCACCGAGCCCCTGATGGAAATCGCCGGGGCGCTCGGCATCATGGCGGCCCTCTGGTACGGCGGCTACCGGATCATCGAGGGGCACATGACGCCGGGGACGCTGTTCTCGTTCACGGCGGCCGCGCTCATGCTCTACGGGCCGGTGCGCCGCCTCTCGCGATCCCTGAACGTCGTCCAGCAGTCGACCGCGTCGGTCGAGCGTGTCTTCTACATCCTGGACCTGCCGCCCGCGATCTCCGACCGCCCGGGCGCCAGGCGGCTCGAGACGTTCAGCCGCACCCTCGTCTTCGAGCGGGTGGACTTCCGGTACCCGGACTCCGAGGAGATGATCCTGAAGGAGATCTCGCTCGAGATCCGCAAGGGCGAGGTCGTCGCCTTTGTCGGTATGTCGGGCGCGGGCAAGTCCACCCTCATCGACCTCGTGCCCCGCTTCCATGACGTGACCGCGGGGCGGATCACGCTCGACGGCCACGACCTGCGCGACGTCACGCAGGCGTCGCTCCGCGCGCAGATCGGCGTCGTCACGCAGGAGAACTTCCTCTTCAGCGACACGATCCGCTATAACATCGCGTAC
PROTEIN sequence
Length: 436
VTLPIGPYRRLVPYLRPHVPILVLGSVLALVVSGMEGLTAWLVKPVMDDIFIRRDTFMLKLIPLVLLAVYVVKGLARYLQSYMMAAVGERVVARLRRELYTHIQSMPLSFFSDVHSADLMSRILTDVTRLARLSSGVLVMAVRQLGTIVALLVVMVAREWALTLTALVAFPAIALIVRTIGRRLYSINKRTQERVAQLAVLLHESFSGTKIVKAFGRERHEQERFDALNDRLLNLSLKNVRADELTEPLMEIAGALGIMAALWYGGYRIIEGHMTPGTLFSFTAAALMLYGPVRRLSRSLNVVQQSTASVERVFYILDLPPAISDRPGARRLETFSRTLVFERVDFRYPDSEEMILKEISLEIRKGEVVAFVGMSGAGKSTLIDLVPRFHDVTAGRITLDGHDLRDVTQASLRAQIGVVTQENFLFSDTIRYNIAY