ggKbase home page

13_1_40cm_3_scaffold_179_12

Organism: 13_1_40cm_3_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: comp(9410..9973)

Top 3 Functional Annotations

Value Algorithm Source
rpoE; RNA polymerase, sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 74.3
  • Coverage: 187.0
  • Bit_score: 290
  • Evalue 1.20e-75
RNA polymerase, sigma-24 subunit, ECF subfamily id=4367557 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 72.0
  • Coverage: 189.0
  • Bit_score: 277
  • Evalue 1.30e-71
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 38.4
  • Coverage: 185.0
  • Bit_score: 121
  • Evalue 2.60e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Rokubacteria_71_22 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 564
GTGGAGCCATCGGACGAAGCGCTCTGCGCGCGTGTGGCCAAGCGGGACGAGGCCGCGTTCGATCTCCTCGTGGCGCGCTACCAGGAGCGGGCGTACCGTCTCGCCTGGTCCATCCTCCGTAACGCCGAGGATGCACGCGACCTCTCCCAGGAGGCGTTCATCCGACTGTACGAGGCGGCCGGGAGCTTCGGCGGGCGGTCGAAGTTCTCGACCTGGTTCTACCGGATCCTGGTCAACCTCTGCCTGGACCACAAGCGCAAGCATCGCTGGTGGAAGCTCTGGACGCGCGACGAAGGTGACGACCGCAACGATCCACTCCTCGAGCGGCAACCGGCACCGGTCGTCGACCCTGTGGACAAGCTGAGCCGGGAGCGGACGATGAAGGAGCTGGCCGCGGCGGTGGACCAGCTCGCGCCGCGCCAGCGGGCCGCGGTCCTGCTCAGGGTGCAGGAGGACATGGCGACCTACGAGATCGCCAAGGTGCTCAAGTGTTCCGAGGCGACCGTGCGCGTCCACCTGCACCGCGCGCTGACGACCCTCAAGAAGACGGTGGAGAAGCGCTGA
PROTEIN sequence
Length: 188
VEPSDEALCARVAKRDEAAFDLLVARYQERAYRLAWSILRNAEDARDLSQEAFIRLYEAAGSFGGRSKFSTWFYRILVNLCLDHKRKHRWWKLWTRDEGDDRNDPLLERQPAPVVDPVDKLSRERTMKELAAAVDQLAPRQRAAVLLRVQEDMATYEIAKVLKCSEATVRVHLHRALTTLKKTVEKR*