ggKbase home page

13_1_40cm_4_scaffold_35_28

Organism: 13_1_40CM_4_Actinobacteria_65_12

partial RP 17 / 55 MC: 1 BSCG 18 / 51 MC: 1 ASCG 6 / 38
Location: comp(27307..27801)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=2 Tax=Lactobacillus oris RepID=E3C8Y3_9LACO similarity UNIREF
DB: UNIREF100
  • Identity: 39.5
  • Coverage: 157.0
  • Bit_score: 110
  • Evalue 1.90e-21
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales similarity UNIPROT
DB: UniProtKB
  • Identity: 37.6
  • Coverage: 157.0
  • Bit_score: 113
  • Evalue 2.40e-22
16S rRNA processing protein similarity KEGG
DB: KEGG
  • Identity: 40.5
  • Coverage: 158.0
  • Bit_score: 108
  • Evalue 2.00e-21

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Syntrophaceticus schinkii → Syntrophaceticus → Thermoanaerobacterales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 495
GTGATCCGCGTCGGACAGGTGACGGGAGCGTACGGGGTCGATGGAGCCGTCAAGGTGATTCCCTTGACAGACTTTCAAGATCGGTTCAGTGCGGGCGCTACGGTAATGCTCGACGGCTGCGAACGACTGGTTGAGTGGAGCCGCGCCGGGCAGCCCGCCGGCCTGGTCGTCAAGCTGCGAGGCGTCGACAACCGCACCTTCGCGGAACTGTTCCGCGGCCGGTACCTCGAGATCCCCGACGGCGCCGCCAGGCCGCTGGACGACGGTCACTTCTACCACCATCAGGTGGTCGGGCTGGCGGTCCAGACCGGTTCGGGCCGGCAGCTGGGCACTATTGCCGAAGTCCTCGAGCGGCCCGCCAACGACGTGTGGGTGAGCCGCGACGGCAAGGTCGAGCACCTGATTCCAGCCACGCGCGACGCGGTGCTGGAGGTGAGCCTCGAAGCACGGCGCGTGGTCGTCGCCGATTGGCTGCTCGAGGTCGAGGAAGCGTAG
PROTEIN sequence
Length: 165
VIRVGQVTGAYGVDGAVKVIPLTDFQDRFSAGATVMLDGCERLVEWSRAGQPAGLVVKLRGVDNRTFAELFRGRYLEIPDGAARPLDDGHFYHHQVVGLAVQTGSGRQLGTIAEVLERPANDVWVSRDGKVEHLIPATRDAVLEVSLEARRVVVADWLLEVEEA*