ggKbase home page

13_1_20cm_3_scaffold_4494_2

Organism: 13_1_20CM_3_Actinobacteria_71_11

partial RP 40 / 55 MC: 3 BSCG 35 / 51 MC: 4 ASCG 12 / 38 MC: 5
Location: comp(758..1519)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IXQ1_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 86.6
  • Coverage: 253.0
  • Bit_score: 430
  • Evalue 1.30e-117
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP80210.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 253.0
  • Bit_score: 430
  • Evalue 1.80e-117
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 86.6
  • Coverage: 253.0
  • Bit_score: 430
  • Evalue 3.60e-118

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 762
ATGGCGCAGCGGATCAGCCGGGCCAAGCGCGCCCTGCAGGGGCGCCGCCTGGACCAGCCCGGCGACCTCGCCGTCGTGCTGCGCGTGCTCTACCTCATCTACACGGCCGGCCACGCGGGCCGGGTGGACCTGGCCGGCGAGGCGATCCGGCTCGCCCGCCAGCTCACCCTCGCCACCGAGGAACCCGAGGCGCGCGGGCTGCTCGCGCTGATGCTCCTCAACCACGCCCGGCTCCCGGCGCGCCTGGACCCCGAGGGCCGCATCGTCACCCTCGACCGGCAGGACCGGAGCCGGTGGAACACCCGCGAGATCGCCGAAGGCGTACGCATTCTGCAGTCGGCGCTGGCCATGCGGACCGACGACCGGCGCCCGGGCCGCTACCAGGTCGAGGCCGCCATCGCCGCCCTGCACGACGACGCGGCCAGCGCCGAGGAGACCGACTGGCCCCAGATCCTCGCCTGGTACGACGACCTCGTCGCCCTCACCGACGACCCGGTACGCCAGGACCCCGCCGCGGTACTCGGCCGTGCCGTCGCGGTCGGCCACGTTCTCGGCGCCGCCGCGGGGCTGCGCGAGACCGACCGGCTGCGCGAGGTGATCGGCGAGCGGCACCGGTGGTACGCCGTGCGCGGGCACCTGTACGAGCTGGGCGGCGACCTGGCCGCCGCCGCCACGGCGTACGCCGAGGCCGCCCACCGGGCCACGAACGTCGCCGAGCGCGACCACCTGGTCCGCCAGGCCGCCCGCGCGCGAGCCACCTAG
PROTEIN sequence
Length: 254
MAQRISRAKRALQGRRLDQPGDLAVVLRVLYLIYTAGHAGRVDLAGEAIRLARQLTLATEEPEARGLLALMLLNHARLPARLDPEGRIVTLDRQDRSRWNTREIAEGVRILQSALAMRTDDRRPGRYQVEAAIAALHDDAASAEETDWPQILAWYDDLVALTDDPVRQDPAAVLGRAVAVGHVLGAAAGLRETDRLREVIGERHRWYAVRGHLYELGGDLAAAATAYAEAAHRATNVAERDHLVRQAARARAT*