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13_1_20cm_3_scaffold_1250_4

Organism: 13_1_20CM_3_Alphaproteobacteria_64_12

partial RP 29 / 55 MC: 1 BSCG 28 / 51 ASCG 5 / 38
Location: comp(2570..5575)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1616823 species="Bacteria; Proteobacteria; Al UNIPROT
DB: UniProtKB
  • Identity: 47.9
  • Coverage: 999.99
  • Bit_score: 819
  • Evalue 4.10e-234
Ribonuclease E n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LRJ8_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 47.6
  • Coverage: 999.99
  • Bit_score: 815
  • Evalue 7.20e-233
  • rbh
ribonuclease similarity KEGG
DB: KEGG
  • Identity: 46.9
  • Coverage: 999.99
  • Bit_score: 780
  • Evalue 5.50e-223

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Taxonomy

Thalassospira sp. HJ → Thalassospira → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3006
ATGGCAAAGCGCATGCTCATCGACGCTGCCCACCCCGAGGAGACTCGGGTGGTGGTGCTCAGCGGCAACCGACTCGAAGAGTTCGATTTCGAGTCGTCCACCAAGAAGCAGGTAAAAGGCAACATCTACCTTGCGAAGGTAACGCGGGTCGAACCGTCGCTGCAGGCCGCCTTTGTCGATTATGGCGGCAACCGGCACGGCTTCCTCGCCTTCAGCGAAATCCATCCGGACTATTACCGCATCCCGGTCAGCGACCGGTCGGGTCGCAACGGCGAGGCGGCAAAGCCGTCCGGCCGCGGCGCGGCGAATGGCGGCGACGATGCCGGCGTGCCGCTTGCGGCGGCATTGCCCGAACCGGTGCCGGTGCCGGAGGCTGGCTCGGGGGAGGAGGACACGTCTCCGGAGGAAGAGCGAGCCCCAGAGCGCCCGTCCGACAGCGAACACGCGGAGCCCCACTACGGCGAACATGCCGAGCGCCACGAGGGCGAAGCCACGCCGACATCTGAACCGGGACAAGATTTTCATGCGGCGGTGACCGACGCGGCGCCGACGACCGATTGGAGCGCGCCGCTCCCACCAGCCGAGCCCGCCCCCGAGCACTCGGAGGGATCGGAACACTACCAGGAGCCGGAACCGACGCTCGCCGCCTGGCAGGAGGACTGGCAGCCGCCGCCCACCGGGCCAGCCCAGCACGAAACCGCCTCTCACGACAGCAACCAAGCCACGGTTTTGTGGGATGAGGCGCACGCCGATGGTGTCGGCAGCCAGGGTTCGGAACCGGGGTCGATTGCGTTGCGCGCCGCCCAAGAATCCGTCGTCTCGGCCGAGATCGCCGACACGCCGGTGAACGGCGATGCGGCGGAGCCCGTGAGGGGCACCGTCGAGACACTCGGCGGCGATGAGGTCGAAGAGGTCGAGGAGGCCGACGCGGAGCGGCGGCGGCGCTACTCCGTCCGCCACTACAAGATCCAGGAGGTCATCAAGCGCCGCCAGATCATGCTCGTGCAGGTCGCCAAGGAAGAGCGCGGCAACAAGGGCGCGGCGCTGACGACCTATCTCTCGCTCGCTGGGCGCTACTGCGTGCTGATGCCGAATACCGGTCGCGGCGGCGGCGTCTCGCGCAAGATCACGAGCCTCAGCGATCGCCGGCGGCTGAAGGAAATCCTCGAAGAGCTCGAGATCCCCGAGGGGATGGGCGTCATCGTCCGCACCGCCGGTTCCGAGCGGTCCAAGGCCGAGATCAAGCGCGACTACGAATACCTGCTGCGGCTGTGGAACGAGATCCGCGACCTGACGCTCAAATCGACCGCGCCGGCCCTGATCTACGAAGAGGGCAATCTGATCAAGCGCGCGATCCGCGATCTTTATTCGCGCGACATCGACGAGGTGCAGGTCGAAGGCGAGGAGGGCTACCGCACCGCCAAGGCATTCATGCGGACGCTGATGCCGAGCCATGCGAAGCGCGTACAGCCTTATCGCGATCCGCAGGTCGGGTTGTTTCACCGCTTCCAGGTCGAGAGCCAGATCGACGCGATCCACTCGCCGGTCGCGCAATTGCGCTCGGGCGGCTACGTCGTCATCAACCAGACCGAGGCGCTGGTCGCGATCGACGTCAATTCCGGCCGCTCGACGCGCGAGCGCAATATCGAAGAGACCGCGCTGCGCACCAATCTCGAAGCCGCCGACGAGATCGGGCGCCAGCTGCGCTTGCGCGATCTGGCCGGGCTGATCGTCATCGATTTCATCGATATGGAGGAGCACCGCAACCAGGGCGCGGTCGAGCGGCGGCTGAAAGAGGCGTTGAAGAACGACCGGGCGCGCATCCAGGTCGGCCGCATCAGCCCCTTCGGATTGCTTGAAATGTCGCGGCAGCGGCTTCGCCCGTCGCTGACCGAGGCCTCGACGCAACCTTGCCCGCATTGCGGCGGCACCGGCTTTATCCGCTCGGTTGAATCCACAGCGCTCTATGTCCTCCGCTCGATCGAGGAGGAGGGGATCCGCCGGCGTTCGGCGGAGATCTGCATCTATGTGCCGACCACGGTGGCGCTCTACATGCTGAACCAGAAGCGCGAGTCGCTGGCGCAGATCGAGGCGCGCTACGGCATCAAGGTCGTGGTGGCGCGGGACGATTCCCTGATCCCGCCGAGCTTCCGTCTCGAGCGTCTGCGCGCCTACGGCGCCGGCGAGGCGCCGACGCTGCCGCGGTCGATCCAGGCCCCCGCTATCGAGGATGAAGACGAAGAGGCGGACGAGACGGAAGAGGCCGAAATCGAAGCTGCGCCGCCGCGCGCCAATGGCGCGGACGCGGCGGGCGAGCCCGAGACCGACGAGGAACGCGGCCGCCGACGTCGTCGTCGCCGTCGCCGCCGTTCGGATGAAGGGCGTGAGGGCCGTCCGGCTCCCGCCGCCGCTCGCGAACCGAAAGAACCTGCCGAGCCGGCGGAGAGCCGCGAGGCGCACGGCTCCGGCGAGGAAGAGCGCGACAGCGACGAACGCCGGCGCCGGCGGCGCGGCCGGCGCGGCGGCCGGATCCGCGGTCGTCGCGAGGAGGCGGCCGACACGCGCAGTCCGCATGTCGCCGCCGAGACGATCGAGATCGTCCCGGGTGGCGATGGTGAACGCGTCTCCGAGGAAATCTCCGCCGAAAGCCTGCGCCCGTGGGCCGGCGATTCCGGCGTTGAGACCGCGAGCCTCGCGCCGCTGGCCGGCGAGGCCTTCGAGCCTCGGCATGCTTCGCTGTCCGACCGGGAGCATGAGCCAGAAATCCCGGCCGCTCCGGCCGCCGAAGCCGAAGAGGGCGTTCCGTTTGTCGGCGAAACCGAGCGGGCGCTCGAACAAGCTGCCGCCGCCTCGGAGACCGCCGCGACGTCCCACCACGAAGCGCCGTCGCACCACGAAGCGCCGTCTTACTCGGCGCCGGGTACTCCCAATGAGGAGGTGTTGACGGTCAACGAAAAGCCGGCCAATCCGCGGCGCGGCTGGTGGCAGCGGCTGATCCAGCCGTAA
PROTEIN sequence
Length: 1002
MAKRMLIDAAHPEETRVVVLSGNRLEEFDFESSTKKQVKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLAFSEIHPDYYRIPVSDRSGRNGEAAKPSGRGAANGGDDAGVPLAAALPEPVPVPEAGSGEEDTSPEEERAPERPSDSEHAEPHYGEHAERHEGEATPTSEPGQDFHAAVTDAAPTTDWSAPLPPAEPAPEHSEGSEHYQEPEPTLAAWQEDWQPPPTGPAQHETASHDSNQATVLWDEAHADGVGSQGSEPGSIALRAAQESVVSAEIADTPVNGDAAEPVRGTVETLGGDEVEEVEEADAERRRRYSVRHYKIQEVIKRRQIMLVQVAKEERGNKGAALTTYLSLAGRYCVLMPNTGRGGGVSRKITSLSDRRRLKEILEELEIPEGMGVIVRTAGSERSKAEIKRDYEYLLRLWNEIRDLTLKSTAPALIYEEGNLIKRAIRDLYSRDIDEVQVEGEEGYRTAKAFMRTLMPSHAKRVQPYRDPQVGLFHRFQVESQIDAIHSPVAQLRSGGYVVINQTEALVAIDVNSGRSTRERNIEETALRTNLEAADEIGRQLRLRDLAGLIVIDFIDMEEHRNQGAVERRLKEALKNDRARIQVGRISPFGLLEMSRQRLRPSLTEASTQPCPHCGGTGFIRSVESTALYVLRSIEEEGIRRRSAEICIYVPTTVALYMLNQKRESLAQIEARYGIKVVVARDDSLIPPSFRLERLRAYGAGEAPTLPRSIQAPAIEDEDEEADETEEAEIEAAPPRANGADAAGEPETDEERGRRRRRRRRRRSDEGREGRPAPAAAREPKEPAEPAESREAHGSGEEERDSDERRRRRRGRRGGRIRGRREEAADTRSPHVAAETIEIVPGGDGERVSEEISAESLRPWAGDSGVETASLAPLAGEAFEPRHASLSDREHEPEIPAAPAAEAEEGVPFVGETERALEQAAAASETAATSHHEAPSHHEAPSYSAPGTPNEEVLTVNEKPANPRRGWWQRLIQP*