ggKbase home page

13_1_20cm_3_scaffold_6506_3

Organism: 13_1_20CM_3_Actinobacteria_68_9

near complete RP 43 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 9 / 38
Location: comp(1321..1596)

Top 3 Functional Annotations

Value Algorithm Source
rpoE1; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWA2_Rokubacteria_73_35_curated UNIPROT
DB: UniProtKB
  • Identity: 50.7
  • Coverage: 75.0
  • Bit_score: 75
  • Evalue 5.20e-11
RNA polymerase sigma-E factor id=1709623 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 50.7
  • Coverage: 75.0
  • Bit_score: 75
  • Evalue 3.70e-11
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 43.6
  • Coverage: 78.0
  • Bit_score: 69
  • Evalue 5.70e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWA2_Rokubacteria_73_35_curated → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 276
ATGCTGCAGCCGCCCGCCAGCACGGGGTCAGACCCGCAGGATATCGCCGCCCGGCACGACCTGCAGCGCGCCGTCCGTCACGCGATCGCGAGCCTGCCGCCACATTACCGTGACACGATCGCCCTGCAGGCCTTCGGCGAGCTCAGCTATGACGAGATCGCCAAGGCGCTCGACATCCCGCTGGGCACCGTGATGTCGCGCCTGAACGGCGCCAAGCGTCTGCTCCGTGAGCGCCTGGGAGACCTCGTTCGGAGCGAGGAGGCGAATACGGCATGA
PROTEIN sequence
Length: 92
MLQPPASTGSDPQDIAARHDLQRAVRHAIASLPPHYRDTIALQAFGELSYDEIAKALDIPLGTVMSRLNGAKRLLRERLGDLVRSEEANTA*