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13_1_40cm_2_scaffold_7727_3

Organism: 13_1_40CM_2_Actinobacteria_65_8

partial RP 18 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 6 / 38
Location: 1966..2520

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mycobacterium tusciae JS617 RepID=H1K0F7_9MYCO similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 152.0
  • Bit_score: 125
  • Evalue 4.80e-26
ECF sub family sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 155.0
  • Bit_score: 124
  • Evalue 2.30e-26
Putative ECF sub-family Sigma-70 factor {ECO:0000313|EMBL:CAJ62779.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.5
  • Coverage: 155.0
  • Bit_score: 124
  • Evalue 1.20e-25

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Taxonomy

Frankia alni → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGACCTCGGAACCCCCCCTTCCCGATGATTCGGCCGCGCCGTCCGAGCGCACCGGAGAGGTCGTCGACCTCCCTTCAGCGACGCGCGCGACCGACATCGCCCTGGATGAGCTCGAGCTGGTGTACGCGTTCATCTACGCGCGGGTTGGCAACCGCGCCGACGCCGAGGACCTAACGCAACAGGTGGCGCTGAAGGCCTTCCCGCGCCTGCGCGAGGGGTCTCCGCCGAGCGCCATTCGAGGCTACCTGTTCGCCACCGCGCGCTCAGTGTTGGGGGCGTTCTGGAGCACCCGGTTGGGCCTCTCGACGGCCGAGCTGCATGAGGACCTCGCGCTGGCCGTTCCGCGGGGACCAGACTCCGATGAGCCCGTGGAGAGGGCGGGGCGCATCCTGGCCGGCCTGAGCGACAACTACCGCCGCGTCCTTGAGCTGCGTTTCCTGCACGGGTACTCACTGAAGGAAGTGGCCGCCGAGATGCGCTCGACCGTCGGCGCGGTGAAGGTGATGCAGCTGCGCGCCTTGCGAGCGGCGGCGAAGGTCGATGTGGATGCCTGA
PROTEIN sequence
Length: 185
MTSEPPLPDDSAAPSERTGEVVDLPSATRATDIALDELELVYAFIYARVGNRADAEDLTQQVALKAFPRLREGSPPSAIRGYLFATARSVLGAFWSTRLGLSTAELHEDLALAVPRGPDSDEPVERAGRILAGLSDNYRRVLELRFLHGYSLKEVAAEMRSTVGAVKVMQLRALRAAAKVDVDA*