ggKbase home page

13_1_40cm_3_scaffold_236_14

Organism: 13_1_40CM_3_Gemmatimonadetes_66_12

partial RP 18 / 55 BSCG 21 / 51 ASCG 10 / 38 MC: 1
Location: comp(13506..14048)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI4_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 56.0
  • Coverage: 175.0
  • Bit_score: 195
  • Evalue 3.70e-47
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 71.7
  • Coverage: 180.0
  • Bit_score: 265
  • Evalue 8.20e-69
RNA polymerase ECF-type sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 72.8
  • Coverage: 180.0
  • Bit_score: 265
  • Evalue 4.10e-68

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 543
GTGGACGAATCACAGCTCATTGCCCGCGTCCGCGCCGGGGATAGCGCCGCAGAGCGCGCGCTGTATGACGCACACGTGGACCGCGTGTACCGCCTGGCCTTCCGGCTCGCGGGCGATGATGCCCTCGCGCAGGATTTCACCCAGGAAACGTTCATCCGCGCGTTCGACCGGCTCGGCTCGTTCCGAGGCGATGCGGCATTTTCGACCTGGCTGCACACGATCACGACCACGGTCGTGTTGAACGGTCTGCGCAAGGTGAAGCGGTTCCGGCAGCGGGAAGCGGACATCGACGACGCGCACGACATCGGTGTCGCGCAACGGCACGCCGAACCGGATTTGAAAGCGCGGCTCAAGCAGGCGATCGATGACTTGCCAGAAGGTTACCGAACGGTGTTCCTGATGCACGATGTCGAGGGCTATACACACGAAGAAATCGGCGTCGCGTTGGGCGTCGAGACCGGCACGTCAAAGGCGCAGCTGTCGCGCGCACGCGCCAAATTGCGCGTCGCGCTGTCGGACTTCGCAGGAGAATGGGTGCAATGA
PROTEIN sequence
Length: 181
VDESQLIARVRAGDSAAERALYDAHVDRVYRLAFRLAGDDALAQDFTQETFIRAFDRLGSFRGDAAFSTWLHTITTTVVLNGLRKVKRFRQREADIDDAHDIGVAQRHAEPDLKARLKQAIDDLPEGYRTVFLMHDVEGYTHEEIGVALGVETGTSKAQLSRARAKLRVALSDFAGEWVQ*