ggKbase home page

13_1_40cm_3_scaffold_1408_16

Organism: 13_1_40CM_3_Gemmatimonadetes_65_8

partial RP 14 / 55 BSCG 11 / 51 ASCG 5 / 38
Location: 16694..17203

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC64_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 45.2
  • Coverage: 166.0
  • Bit_score: 134
  • Evalue 1.30e-28
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 59.9
  • Coverage: 157.0
  • Bit_score: 176
  • Evalue 3.10e-41
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 48.2
  • Coverage: 164.0
  • Bit_score: 144
  • Evalue 2.00e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 510
GTGCCTGAAGACATCGCTGAGGTGTACCGCAGCACCTACGGCGCGCTTGTGCGGTTCCTGTACCGCAAGGTCTGGGATGCCGAGCGCGCCGAGGATCTCGCGCAAGAGGCATTCGCCCGGGCGCTTGTGCACCGACCCGAAAAGGCGCGGGGGTGGTTGTTCGTCGTGGCAGCCAACATGGCGCGCGATGAAGCGCGCCGCGCGGCACGCGAAAAGCGGCACCTCACCCTACTGAAGAGCGAGTCGGATTTCGTGCACGGCTCGCCTGAAGAAGCGATCGATGCCGATACCCAGCGCACTCACGTACGCGCGGCACTCGAGCAGCTGACGCCGCGTGACCGCGAAGCGTTGCTGTTGTGGGACTCGGGGCTATCCTACGATGAAATCGCCGCGCAAACAGGGTTAGCGCGCGGCGCGGTCGGAACCACATTGGCGCGGGCGCGCCGGAGGCTCGTCGAAGCGTATGACGCAGGACTCGCGGGAGGAGGGCAGCATGTCGCACGTGGATGA
PROTEIN sequence
Length: 170
VPEDIAEVYRSTYGALVRFLYRKVWDAERAEDLAQEAFARALVHRPEKARGWLFVVAANMARDEARRAAREKRHLTLLKSESDFVHGSPEEAIDADTQRTHVRAALEQLTPRDREALLLWDSGLSYDEIAAQTGLARGAVGTTLARARRRLVEAYDAGLAGGGQHVARG*