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13_2_20cm_scaffold_18079_6

Organism: 13_2_20CM_Verrucomicrobia_54_12

near complete RP 47 / 55 BSCG 45 / 51 ASCG 11 / 38
Location: comp(4408..7665)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262691 species="Bacteria; V similarity UNIPROT
DB: UniProtKB
  • Identity: 50.1
  • Coverage: 999.99
  • Bit_score: 981
  • Evalue 1.20e-282
Transcription-repair-coupling factor n=1 Tax=Akkermansia sp. CAG:344 RepID=R7E1V0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 50.1
  • Coverage: 999.99
  • Bit_score: 981
  • Evalue 8.20e-283
mfd; transcription-repair coupling factor mfd (superfamily II helicase) similarity KEGG
DB: KEGG
  • Identity: 56.5
  • Coverage: 642.0
  • Bit_score: 725
  • Evalue 1.80e-206

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Taxonomy

Akkermansia sp. CAG:344 → Akkermansia → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3258
GTGCAGTTCTCACACGTCATCCAAGCAGCCCAGCCATTTGTGGCTGCCATAATCGCGCACACGTGGTTTCGCCTTCGAGCCGATGATCGGCAGACTGCCGATTCCACGATTTGGATCCTCTGTCCCAGCGTGCATTCTCAAGAGTCGTTCTACGAAAGCTTGGTTAACTGGCAGTCGGATGCGCTGTTTCTCCCCGAAGCTGAGTTTGCAGCAGCCGAAAATGTTTTGCCGGATCCGGAAATCGTAGCGGAACGCCTGGCAGTCCTAATGCAAATCGGGCGCGGAACCGGTCCGCGCGTCGTAGTCGCAACGCGCGCGAGTCTCGACCAAGCTGCGGCAGGCCGCGACACATTGCAATCTGCTCTCACTCAGCTGCGGCGCGGAGCAAGCGCCCAGATGGAAGACCTTCTCAACCGACTTGTCACCGCCGGTTATGAGCGCGTCGCCCAAGTCACCACCCGGGGACAGTTCGCCGTCCGCGGCGGCATTGTCGATCTTTATTCGTGGCAAGCGCCATTGCCGTTGCGGCTGGAATTTTTCGGCGATCAGATCGAATCACTGCGCGAGTTCGACATCGATACTCAAACTTCGGTGCGCGATTTGGGTTCGATTGATATTTTGCTCGGAGCAGGAGCGGCGGTCTCCAGTCCGCCGTCGGGCCGATCGGGAGATCGATCTTTGTTAGTCGACGACCAAAGCGGTCGAGTCCGCGATTACGTCGCTCCAAATGATCTGATAATTGATCTTGAACCGGAGATGGAGAGCGGAGCTCATGCGACGCCAGGCTCGCAGGAGCTCGCCCCTCCACACATTCAGATCAGCGAAGGTTGGATTGAGACTGGTCAGGAAGATTTCAGCGGGGCATTCCAGGATTGCGAGATCGGCGAGTTTGCCGTCGGCGATCTGGTGCTCGCCGAAGCAAAACGGGCGCAGTTTTCCCACCGTTTAAAAGAATGGCGCGCCAATAACACGAAAATCATCATTTATTTTCAGACTGAGGGCGAGATCGAGCGATTTCGCGAGATCATGGCCGGCGCCATTGAAGGAGTCGATTTTGTCGAAGGCACTCTTGCTCGCGGATTTTGTTTCCCCGAGGCCAATCTCGTCGTCCTCTCCGCCGCGGAATTATTTGGACGATTCGCGGCCCATCCGCGCAGGCGTTTGCGTCGTGCGGACCGCAATCGCGCGCAGATTGATTTCAGTGAGCTCAACGAGGGCGACCTCGTCGTGCACCTTGAACACGGCATCGGGCGATTTCTTGGATTGATCCAGCTCTCAAAATCTCCAAGTACTGTAGCGGTAGGCGTGTCGCCTGCTTCATCGAACCGTGCAGCCGACACGGCTGCCACTGCAGACGGAACTCAGGAAGTTCTTGCGCTTGAGTTTGCAGATGAAGCGAAGCTCTATGTTCCACTCGAGCAGGCGTATCTCGTTTCCCGGTATGTTGGCGCGGGGAAAAAATCGCCGCCACTCAGCTCACTCGGCGACGGAAGATGGGCTCGCGCCAAAATAAAGGCGGCCGCTTCCATATTTGATTACGCCGGGAAAATGCTCGCGGTCCAAGCCGAGCGCCAATTGCATCCGGGCTACGCATTCGCCTTGGACACAAAATGGCAGGCAGAATTTGAACATTCATTCCCATTCCGTGAAACGCCGGACCAAATGAGGGCAATCATCGATACGAAGATCGACATGGAACGTCCTCGACCGATGGACCGGTTGATCTGTGGCGACGTCGGTTTTGGCAAAACCGAAGTGGCGGTGCGCGCCGCGTTTAAAGCAGTCATGGACGGCAAACAAGTGGCCGTACTGGCTCCAACTACGGTTCTAGCTCAACAGCATTTCGAGGTGTTCAGGCAACGCATGCTCGACTACCCAGTGCGCATCGAAATGCTCAGCCGTTTCCGTTCGCAATCGGAGCAGAAAAAAGTGTTGCGACTGCTGCGCGAAGGCGGTGTCGATATTGTCATCGGCACGCATCGGCTCATCTCGGGCGACGTCGTATTTAAAGATCTCGGCCTGGTAGTGATTGATGAGGAGCAGCGCTTCGGAGTATTGCACAAGGAAAAATTCAAAGAGCTCTTCAAGCTGGTCGATGTGTTGACGCTGTCGGCCACCCCGATTCCTCGCACGCTTTATCTTTCACTTGTTGGCGTAAAAGATATGTCCACGATCGAGACTCCGCCGCTCAACCGCCTGCCGGTAGAAACAGTGGTGTCGGCTTACGATGAGCGGCTGATTCGCGCGGCGATCGATCGCGAGCTCGAACGGCAAGGTCAGGTATTCTTCCTGCACAATCGCGTAGCGAGTATTGAGCGGGTGCGGGATCGGGTCGTCGATCTTTGTCCACAAGCGAGAGTTGAGATCGGGCATGGCCAGATGGATGCCGACGAGCTGGAAGGCGTTATGGCGCGATTCATTGCCGGGAAAATCGATGTGCTCGTTTGCACCACGATCATCGAAAGCGGTCTCGATATACCGAACGCAAACACTATCATCATCGATCGGGCGGACCAATTTGGTCTCGCCGATTTGTATCAATTGCGCGGGCGCGTCGGCCGGGCGGAGCACAAGGCATACGCTTATCTGTTGCTTCCGCGCGAAATGATGACTGTGGGCGCAGCGCGCAAACGGATCAGCGCAATCAAACAGTACAGTTCGCTCGGTGCAGGTTTTCGTATTGCCATGCGCGACCTGGAGATTCGCGGCGCGGGCAGCATGCTGGGCACAGCTCAAAGCGGCCACATCGTGGCGGTCGGTTTCGACTTGTATTGTCAGTTGCTCAAACAGGCAGTAGCGCAGATCAAGGGCAAGAAGCCGCGTTTTCGGCTCGATGTCGACCCGCCGATACCAAGGAGCAGAGGTTTGCCGTCCGTCGGGGCGCGTGGGGAAGCGGCTTACCCTGAGAAAATTCCAGCCTTCATTCCAATCACCTACGTCAGCGATCCCAGTTTGCGCATCCGGGCATACCGGGACGTCGCAGAAGTTACCACGCAGGAGCAATTAGACCGTCTGCGACGCCACTGGCGAGACCGCTTTGGGCCGTTCCCGCCACCGGTTGACAATTTGTTTGGCCTCATCGAAATCAAGCTCGCTGCTGCAAAATCAGGGATAAACCGCGTCGAGGTGCGTGAACGCAAATTGATGTTGACGCGGCGCGGGGATTTTATACTTGTCGCGGGCAAATTCCCTCGTTTAGTTGAAGCCAAAATCGAGCAGCATCTCGGGGAGATTCTGGAATTAATTAAGAAATTATGA
PROTEIN sequence
Length: 1086
VQFSHVIQAAQPFVAAIIAHTWFRLRADDRQTADSTIWILCPSVHSQESFYESLVNWQSDALFLPEAEFAAAENVLPDPEIVAERLAVLMQIGRGTGPRVVVATRASLDQAAAGRDTLQSALTQLRRGASAQMEDLLNRLVTAGYERVAQVTTRGQFAVRGGIVDLYSWQAPLPLRLEFFGDQIESLREFDIDTQTSVRDLGSIDILLGAGAAVSSPPSGRSGDRSLLVDDQSGRVRDYVAPNDLIIDLEPEMESGAHATPGSQELAPPHIQISEGWIETGQEDFSGAFQDCEIGEFAVGDLVLAEAKRAQFSHRLKEWRANNTKIIIYFQTEGEIERFREIMAGAIEGVDFVEGTLARGFCFPEANLVVLSAAELFGRFAAHPRRRLRRADRNRAQIDFSELNEGDLVVHLEHGIGRFLGLIQLSKSPSTVAVGVSPASSNRAADTAATADGTQEVLALEFADEAKLYVPLEQAYLVSRYVGAGKKSPPLSSLGDGRWARAKIKAAASIFDYAGKMLAVQAERQLHPGYAFALDTKWQAEFEHSFPFRETPDQMRAIIDTKIDMERPRPMDRLICGDVGFGKTEVAVRAAFKAVMDGKQVAVLAPTTVLAQQHFEVFRQRMLDYPVRIEMLSRFRSQSEQKKVLRLLREGGVDIVIGTHRLISGDVVFKDLGLVVIDEEQRFGVLHKEKFKELFKLVDVLTLSATPIPRTLYLSLVGVKDMSTIETPPLNRLPVETVVSAYDERLIRAAIDRELERQGQVFFLHNRVASIERVRDRVVDLCPQARVEIGHGQMDADELEGVMARFIAGKIDVLVCTTIIESGLDIPNANTIIIDRADQFGLADLYQLRGRVGRAEHKAYAYLLLPREMMTVGAARKRISAIKQYSSLGAGFRIAMRDLEIRGAGSMLGTAQSGHIVAVGFDLYCQLLKQAVAQIKGKKPRFRLDVDPPIPRSRGLPSVGARGEAAYPEKIPAFIPITYVSDPSLRIRAYRDVAEVTTQEQLDRLRRHWRDRFGPFPPPVDNLFGLIEIKLAAAKSGINRVEVRERKLMLTRRGDFILVAGKFPRLVEAKIEQHLGEILELIKKL*