ggKbase home page

13_2_20cm_scaffold_1808_4

Organism: 13_2_20CM_Verrucomicrobia_54_12

near complete RP 47 / 55 BSCG 45 / 51 ASCG 11 / 38
Location: 4223..5620

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=497964 specie similarity UNIPROT
DB: UniProtKB
  • Identity: 64.1
  • Coverage: 334.0
  • Bit_score: 427
  • Evalue 2.70e-116
transcription termination factor Rho n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746046 similarity UNIREF
DB: UNIREF100
  • Identity: 52.4
  • Coverage: 460.0
  • Bit_score: 480
  • Evalue 2.50e-132
rho; transcriptional terminator Rho similarity KEGG
DB: KEGG
  • Identity: 47.7
  • Coverage: 461.0
  • Bit_score: 420
  • Evalue 6.80e-115

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1398
ATGGAAGAAAAGCTAAAGGTCTCGACCTCGCAGACAGAAACAGTAGAGGCAGGAGTCTCGCCTGCACGCACCCAAAGCGCAGCGGACGCTTCGCAAGCCTCCAAGACGCGATCCAACGAAAAGGACAAGCTAAAAACCGGCCTCGCACTTGATCTGAACGAGCTGCAAGAATCCTCGGGTGAAGAACTCGAGGCCTTGGCGCGCGATTTGGATGTTTATCTACACCCTGCGCGGTCGCGGCATCAGCACCTTCTCGATATCGTCCGCGCGGCATTAGCAACAGACGCCCCTGTCACTGCAGAAGGTTTCCTCGATCAGGTGGGCGATTCCTTTGCCATGTTGCGCTGGCCGAAATTGAACTTTCTGCCGGTTCCGGAGGATGTTTGCGTATCTCGCGCCCTCATTGAACAGCATCATCTGCGGCCTGGGCAAAAGATTGCAGGGATAGTGCAATTGCCAGGTCAACGCGGGAAGTTTCTCTCTCTCGAGAAAGTTACAAGAATCGAGGGCCAGCCAGCTAAGGAATGGACGGAGCCAACCGACTTCGACAAGCTAACGCCGCAGTTTCCGCAGGGCAGGATCATGTTGGAAAATCCGAAGACGAATTCTCTCACTGCGCGCGCGGTGGATTTGCTGGCACCACTTGGGCACGGACAGCGTGGGCTTATCGTGGCGCCGCCGCGAGTGGGCAAGACCATCTTGCTAAAGGAAATCGCCAAAGCAATTCGGGTAAATCATCCTGACATTGTTCTTATCTTGCTTTTGGTGGACGAGCGGCCGGAAGAAGTGACGGACTTGGAGCGGGAAATCGACTGCCAGATCTACCATTCCAATTTTGACGAAAGCGTGCAGCGACACGTGCAAGTAGCAGAGATGGTGATGGAGCGCGCCAAACGCCTCGTGGAAATGAGGCAGGATGTTGTGCTTTTGCTCGACAGTATCACGCGGCTTTCGCGCGGATACAACAACATGCAGCCGGGCAGGGGACGAATCATGTCCGGTGGCGTAGAGGCGAAGGCGTTGACCAAGCCAAAGAAATTTTTCGGCTCTGCGCGCAATGTGGAAGAAGGCGGCAGTCTCACCGTGCTTGCGACCGCTTTGACTGAAACTGGCAGTCGAATGGACGAATTGATTTTCGAAGAATTCAAGGGCACCGGTAATATGGAGTTGCATCTTGATCGTGCCCTCCAGGAGAAACGGCTATACCCGGCGATCCACCCGATGCTCTCAGCGACCCGGCGCGAGGAGCTGTTGTATCATCCCGATGAATGGGAACGCGTGCTGATGCTGCGCAAAACGATGGCAGCGCTTCCGCCTCTCGAAGCGATGGAAAAGTTGATTGATAATCTGAATGCGACCAAAACCAACGCTGAATTATTGCTGAGCGGATTGCGTTGA
PROTEIN sequence
Length: 466
MEEKLKVSTSQTETVEAGVSPARTQSAADASQASKTRSNEKDKLKTGLALDLNELQESSGEELEALARDLDVYLHPARSRHQHLLDIVRAALATDAPVTAEGFLDQVGDSFAMLRWPKLNFLPVPEDVCVSRALIEQHHLRPGQKIAGIVQLPGQRGKFLSLEKVTRIEGQPAKEWTEPTDFDKLTPQFPQGRIMLENPKTNSLTARAVDLLAPLGHGQRGLIVAPPRVGKTILLKEIAKAIRVNHPDIVLILLLVDERPEEVTDLEREIDCQIYHSNFDESVQRHVQVAEMVMERAKRLVEMRQDVVLLLDSITRLSRGYNNMQPGRGRIMSGGVEAKALTKPKKFFGSARNVEEGGSLTVLATALTETGSRMDELIFEEFKGTGNMELHLDRALQEKRLYPAIHPMLSATRREELLYHPDEWERVLMLRKTMAALPPLEAMEKLIDNLNATKTNAELLLSGLR*