ggKbase home page

13_2_20cm_scaffold_1830_3

Organism: 13_2_20CM_Acidobacteria_57_17

partial RP 32 / 55 MC: 1 BSCG 33 / 51 ASCG 10 / 38
Location: comp(4680..5078)

Top 3 Functional Annotations

Value Algorithm Source
sigma factor, ECF-like family protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 52.8
  • Coverage: 125.0
  • Bit_score: 129
  • Evalue 4.40e-27
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 133.0
  • Bit_score: 123
  • Evalue 6.30e-26
Putative uncharacterized protein id=2495000 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 37.4
  • Coverage: 131.0
  • Bit_score: 94
  • Evalue 1.10e-16

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Burkholderiales_69_20 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 399
TTGGAGGTGAAAATTGCCTCTCTGATGGCCGACGCCGACAAGGGCGACGGCCCGGCTGCGGAAGCCCTGTTTACGGCGCTCTATGCCGAGTTGCACCGTCTAGCGAAACGCGAATTGGCGCGGCGCGGAACGTTTGTTAGCCTTGGCGTGACGACCCTTCTGCATGAAGCCTACTTAGACATCGCCGGCCGCTGCGGTGCGTCGTTCCCCGACCAGGGACACTTCATGGGTTATGCTGCACGGGTTATGCGCGGGCTCATCATCGATTACGCTCGCCGCCGGCGCGCTATGAAGCGCGGCGGCCAATTTGAGATCAGCGCAATGGTAACCGACGTGGCCGATCACCTGGTGGACGAGCGAGAGCTGCTGCAGGTCAGCGAGGCACTGGATAGCCTCTAG
PROTEIN sequence
Length: 133
LEVKIASLMADADKGDGPAAEALFTALYAELHRLAKRELARRGTFVSLGVTTLLHEAYLDIAGRCGASFPDQGHFMGYAARVMRGLIIDYARRRRAMKRGGQFEISAMVTDVADHLVDERELLQVSEALDSL*