ggKbase home page
Advanced Search
Search Help

13_1_40CM_Rokubacteria_69_96

13_1_40CM_1_Rokubacteria_69_96
In projects: 13_1_40CM_1  |  angelo_ncbi_2016  |  Roku_genomes  |  rokubacteria_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Rokubacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_UNK

Properties

Avg. coverage: 96.10 Longest contig: 19.21 Kbp Bin length: 1.68 Mbp GC content: 69.25 %
Contigs count: 380 Features count: 2023 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 40 / 55 MC: 1 BSCG 37 / 51 ASCG 10 / 38

Description

2cls partial

Displaying items 301-350 of 380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_20194
Species: R_Rokubacteria_73_56 (50%)
2 3534 bp 67.69 92.97 99.41
13_1_40cm_scaffold_123377
Species: R_Rokubacteria_73_56 (50%)
2 1485 bp 74.14 117.47 98.79
13_1_40cm_scaffold_192268
Species: R_Rokubacteria_71_18 (100%)
2 1147 bp 69.75 76.81 100.44
13_1_40cm_scaffold_220154
Species: R_Rokubacteria_73_56 (100%)
2 1037 bp 71.36 84.47 100.10
13_1_40cm_scaffold_155643
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1306 bp 71.36 103.40 99.92
13_1_40cm_scaffold_324980
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 1223 bp 71.79 90.51 102.04
13_1_40cm_scaffold_211630
Species: R_Rokubacteria_73_56 (100%)
2 1069 bp 75.58 76.31 104.68
13_1_40cm_scaffold_51320
Species: R_Rokubacteria_73_56 (50%)
2 2297 bp 73.40 111.57 100.17
13_1_40cm_scaffold_224310
Species: RLO_Rokubacteria_71_22 (50%)
2 1657 bp 73.08 78.16 100.12
13_1_40cm_scaffold_180075
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1198 bp 70.45 101.82 99.42
13_1_40cm_scaffold_138603
Species: R_Rokubacteria_73_56 (50%)
2 2478 bp 62.19 78.10 69.73
13_1_40cm_scaffold_216480
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1051 bp 69.93 82.87 98.76
13_1_40cm_scaffold_288097
Species: R_Rokubacteria_73_56 (100%)
2 1508 bp 72.88 94.54 60.28
13_1_40cm_scaffold_177552
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1209 bp 63.85 78.68 97.77
13_1_40cm_scaffold_101750
Species: R_Rokubacteria_73_56 (50%)
2 1642 bp 70.65 86.67 98.29
13_1_40cm_scaffold_196678
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1129 bp 70.06 104.94 99.11
13_1_40cm_scaffold_288139
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 2014 bp 69.56 78.89 100.25
13_1_40cm_scaffold_215811
Species: GWA2_Rokubacteria_73_35_curated (100%)
2 1053 bp 69.71 90.58 99.15
13_1_40cm_scaffold_177106
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1211 bp 66.14 87.47 86.46
13_1_40cm_scaffold_135871
Species: R_Rokubacteria_73_56 (50%)
2 1410 bp 75.25 119.45 100.21
13_1_40cm_scaffold_182875
Species: GWA2_Rokubacteria_70_23_curated (100%)
2 1186 bp 69.98 101.37 99.92
13_1_40cm_scaffold_177814
Species: GWC2_Nitrospirae_57_13_curated (50%)
2 1208 bp 69.62 82.70 100.08
13_1_40cm_scaffold_40161
Species: RLO_Rokubacteria_71_22 (50%)
2 2583 bp 73.40 121.66 99.88
13_1_40cm_scaffold_81090
Species: R_Rokubacteria_71_18 (50%)
2 1840 bp 66.63 78.71 98.32
13_1_40cm_scaffold_133582
Species: R_Rokubacteria_71_18 (50%)
2 2274 bp 69.00 102.21 94.46
13_1_40cm_scaffold_279197
Species: R_Rokubacteria_73_56 (50%)
2 1560 bp 70.45 94.77 92.69
13_1_40cm_scaffold_246131
Species: R_Rokubacteria_73_56 (100%)
2 1486 bp 72.21 104.05 99.73
13_1_40cm_scaffold_301060
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1383 bp 71.01 111.43 99.35
13_1_40cm_scaffold_82946
Species: R_Rokubacteria_73_56 (50%)
2 1819 bp 71.58 109.84 86.92
13_1_40cm_scaffold_187969
Species: CG_Anaero_02 (50%)
2 1165 bp 68.41 77.78 96.82
13_1_40cm_scaffold_186125
Species: RLO_Rokubacteria_71_22 (50%)
2 1173 bp 69.99 85.38 87.21
13_1_40cm_scaffold_226450
Species: RLO_Rokubacteria_71_22 (50%)
2 2136 bp 64.00 87.78 50.98
13_1_40cm_scaffold_85262
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1794 bp 70.40 108.15 98.66
13_1_40cm_scaffold_155261
Species: R_Rokubacteria_71_18 (100%)
2 1308 bp 72.25 107.08 97.48
13_1_40cm_scaffold_49553
Species: R_Rokubacteria_73_56 (100%)
2 3650 bp 72.05 112.30 92.30
13_1_40cm_scaffold_155264
Species: RLO_Rokubacteria_71_22 (50%)
2 1308 bp 72.32 98.06 95.64
13_1_40cm_scaffold_101583
Species: R_Rokubacteria_71_18 (50%)
2 1643 bp 71.39 102.51 97.32
13_1_40cm_scaffold_194899
Species: R_Rokubacteria_73_56 (50%)
2 1136 bp 73.06 119.53 80.02
13_1_40cm_scaffold_203426
Species: R_Rokubacteria_73_56 (50%)
2 1681 bp 72.46 101.98 100.65
13_1_40cm_scaffold_157581
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1297 bp 68.62 105.47 93.68
13_1_40cm_scaffold_372592
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1350 bp 72.44 78.27 82.89
13_1_40cm_scaffold_264416
Species: RLO_Rhodospirillales_67_15 (50%)
2 1787 bp 72.13 115.32 90.82
13_1_40cm_scaffold_328412
Species: RLO_Rokubacteria_71_22 (50%)
2 1266 bp 71.96 83.67 100.00
13_1_40cm_scaffold_55566
Species: RLO_Rokubacteria_71_22 (50%)
2 2209 bp 67.72 91.24 100.09
13_1_40cm_scaffold_181093
Species: R_Rokubacteria_73_56 (50%)
2 1194 bp 74.62 99.01 97.74
13_1_40cm_scaffold_169805
Species: R_Rokubacteria_73_56 (100%)
2 1951 bp 71.71 98.55 67.66
13_1_40cm_scaffold_304831
Species: R_Rokubacteria_73_56 (50%)
2 1555 bp 67.40 76.51 72.35
13_1_40cm_scaffold_212659
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 1877 bp 67.82 92.67 95.74
13_1_40cm_scaffold_223495
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1025 bp 67.02 78.85 90.73
13_1_40cm_scaffold_141934
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 1897 bp 71.96 79.79 93.94
Displaying items 301-350 of 380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.