ggKbase home page

13_1_40cm_scaffold_1410_14

Organism: 13_1_40CM_Actinobacteria_66_12

partial RP 21 / 55 BSCG 18 / 51 ASCG 4 / 38
Location: comp(8343..8846)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVF0_RUBXD similarity UNIREF
DB: UNIREF100
  • Identity: 43.2
  • Coverage: 162.0
  • Bit_score: 146
  • Evalue 3.10e-32
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 43.2
  • Coverage: 162.0
  • Bit_score: 146
  • Evalue 8.80e-33
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source=" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.2
  • Coverage: 162.0
  • Bit_score: 146
  • Evalue 4.40e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rubrobacter xylanophilus → Rubrobacter → Rubrobacterales → Rubrobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 504
TTGGAGCTGTACGACCGATATGCAGGGCTGGCGTACGCCGTCGCCATGCGAGTCCTCGGGGATCCCGGGCGCTCAGAGGACGTGGTTCAAGAGGCTTTTTTGAAGATCTGGACCAACGCGGCCGCTTTCGATTCCAAAAAAGGTTCGCTTCGCACCTGGCTGATCACAGCGGTGCGCAATCGTTCGATCGACTATTTGCGAGGTCGTGGTGCCCACGAGCGCCAGGAGCTGGAGCTGCAACCGGAGCTGATCGAATCCAGCCTTCGCTCGGATCCATGGCATGAGGTTTCGCTGTCCCTCGAACGCATGGCCGTGCGAGAGGCGGTCGGCAGCCTGCCTGCTGAGCAGCGCCAGGCCGTCCAGCTGGCCTATTTCGGAGGTTACTCGCAGTCGGAGATCGCGGACATGACCCACGTGCCGCTCGGCACGGTCAAGGGCAGGATGCGACTTGCCCTCGAGAAGCTGAGCTCGTATCTCCAGGGTAGGGGGCTGATCAATGTCTGA
PROTEIN sequence
Length: 168
LELYDRYAGLAYAVAMRVLGDPGRSEDVVQEAFLKIWTNAAAFDSKKGSLRTWLITAVRNRSIDYLRGRGAHERQELELQPELIESSLRSDPWHEVSLSLERMAVREAVGSLPAEQRQAVQLAYFGGYSQSEIADMTHVPLGTVKGRMRLALEKLSSYLQGRGLINV*