ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

13_1_40cm_4_scaffold_21289_7

Organism: 13_1_40CM_4_Deltaproteobacteria_68_19

partial RP 40 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 7 / 38
Location: comp(5284..6015)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QJK9_9DELT similarity UNIREF
DB: UNIREF100
  • Identity: 46.8
  • Coverage: 237.0
  • Bit_score: 193
  • Evalue 3.30e-46
Ribosomal large subunit pseudouridine synthase D {ECO:0000313|EMBL:EPX56643.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; similarity UNIPROT
DB: UniProtKB
  • Identity: 46.8
  • Coverage: 237.0
  • Bit_score: 193
  • Evalue 4.60e-46
RluA family pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 46.6
  • Coverage: 232.0
  • Bit_score: 190
  • Evalue 5.90e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Cystobacter fuscus → Cystobacter → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 732
ATGGTTTGTTACGGTTGTGACGTGAGGATCCTGCACCAGGACGCCTACGTTCTCGCGATCGACAAGCCCGCCGGTTTGCTGACGGTGCCGGGACGCGCACCGGACGCGCCCGCGTTGTCGGCGCAGGTGCGCGAGATCGCGCCGGAGGCGATCCCCGTGCACCGGCTGGACCGTGACACCTCGGGAATCGTCCTTTTCGCCGCTACCCGCGCAGCGCACCGCGCGCTGAATGCGGCATTCGAGAGCCGGCGCGCCGAGAAGACCTACCTGGCGCTGGTCCGCGGCGACCTCGCCAAAGCGGAGCGCGTCGATCTGCGGCTTGCGGACTCGCGCGGAGGGCGCGTGCGGATCGCGAAAGAGAACGAGAAGGGCGCGCGCGCCGCGCAGACCCGGGTCGAGCCGAAGGAGCGGTTCGGCGGGTACACCTTCTGCGCCTGCGTGCCGCGGACGGGTCGGACGCACCAGATCCGCGTCCATCTCGCTGCCCTCGGGCATCCACTAGCGATCGATCCGCGCTACGGCATCGACCATCCGCTGCGGGTCGGGGACCTCTGGTCGGGAGCGCCCGACCCGGACGAGGTCGTGCTTGCTCGCACGCCGCTGCATGCGGCGGGGCTGCGCATCCCGCATCCGCGTGGCCGTGGGTGGCTGTGGGTGGAGTCGCCGCTTCCCGACGACATCGGACGCTGCCTCGACCTGCTGCGCGCCTCCCGCCGCTACTCCGTACCCTGA
PROTEIN sequence
Length: 244
MVCYGCDVRILHQDAYVLAIDKPAGLLTVPGRAPDAPALSAQVREIAPEAIPVHRLDRDTSGIVLFAATRAAHRALNAAFESRRAEKTYLALVRGDLAKAERVDLRLADSRGGRVRIAKENEKGARAAQTRVEPKERFGGYTFCACVPRTGRTHQIRVHLAALGHPLAIDPRYGIDHPLRVGDLWSGAPDPDEVVLARTPLHAAGLRIPHPRGRGWLWVESPLPDDIGRCLDLLRASRRYSVP*