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13_1_40CM_2_Archaea_39_4

13_1_40CM_2_Thaumarchaeota_38_5
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Thaumarchaeota  →  TACK  →  Archaea

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 5.39 Longest contig: 40.96 Kbp Bin length: 901.55 Kbp GC content: 38.28 %
Contigs count: 216 Features count: 1108 rRNAs count: 0 tRNAs count: 14

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 18 / 38 MC: 1
Displaying items 101-150 of 216 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_92016
Species: CSP1_1_Thaumarchaeota (50%)
2 1985 bp 40.96 1.89 82.37
13_1_40cm_2_scaffold_154566
Species: marine sediment metagenome (50%)
2 1536 bp 40.36 3.91 98.63
13_1_40cm_2_scaffold_32373
Species: Candidatus Nitrososphaera evergladensis (100%)
2 3208 bp 39.00 2.81 56.11
13_1_40cm_2_scaffold_172525
Species: marine sediment metagenome (50%)
2 1456 bp 37.57 3.19 95.19
13_1_40cm_2_scaffold_234842
Species: CSP1_1_Thaumarchaeota (50%)
2 1252 bp 36.18 2.52 82.19
13_1_40cm_2_scaffold_290621
Species: CSP1_1_Thaumarchaeota (100%)
2 1124 bp 40.12 2.54 97.15
13_1_40cm_2_scaffold_48637
Species: Candidatus Nitrososphaera evergladensis (100%)
2 2675 bp 37.98 2.36 99.48
13_1_40cm_2_scaffold_365596
Species: Candidatus Nitrosopumilus sp. NF5 (50%)
2 1554 bp 39.00 5.02 108.69
13_1_40cm_2_scaffold_111330
Species: Thermofilum pendens (50%)
2 1809 bp 38.97 1.00 81.43
13_1_40cm_2_scaffold_196170
Species: CSP1_1_Thaumarchaeota (50%)
2 1369 bp 41.86 3.29 100.15
13_1_40cm_2_scaffold_119725
Species: CSP1_1_Thaumarchaeota (100%)
2 1744 bp 37.90 6.79 98.57
13_1_40cm_2_scaffold_488913
Species: CSP1_1_Thaumarchaeota (50%)
2 1134 bp 36.68 1.59 72.22
13_1_40cm_2_scaffold_146585
Species: uncultured archaeon (50%)
2 1576 bp 36.61 2.57 35.41
13_1_40cm_2_scaffold_160884
Species: uncultured marine thaumarchaeote KM3_190_E06 (50%)
2 1506 bp 39.91 3.69 94.22
13_1_40cm_2_scaffold_187920
Species: AR15 (50%)
2 1398 bp 39.84 2.68 80.90
13_1_40cm_2_scaffold_49970
Species: Candidatus Nitrososphaera evergladensis (50%)
2 2642 bp 36.94 2.44 60.75
13_1_40cm_2_scaffold_246379
Species: uncultured archaeon (50%)
2 1221 bp 37.76 1.47 66.34
13_1_40cm_2_scaffold_308962
Species: uncultured crenarchaeote (50%)
2 1090 bp 43.30 2.48 90.83
13_1_40cm_2_scaffold_244958
Species: CSP1_1_Thaumarchaeota (50%)
2 1225 bp 35.43 3.06 90.12
13_1_40cm_2_scaffold_203067
Species: CSP1_1_Thaumarchaeota (50%)
2 1346 bp 39.75 2.56 87.59
13_1_40cm_2_scaffold_32181
Species: CSP1_1_Thaumarchaeota (50%)
2 3216 bp 37.66 5.50 96.36
13_1_40cm_2_scaffold_309427
Species: Nitrososphaera viennensis (50%)
2 1089 bp 41.23 5.10 82.37
13_1_40cm_2_scaffold_76405
Species: Candidatus Nitrososphaera evergladensis (50%)
2 2170 bp 37.74 2.76 56.68
13_1_40cm_2_scaffold_321583
Species: RBG_16_Micrarchaeota_49_10_curated (50%)
2 1067 bp 39.18 1.69 97.00
13_1_40cm_2_scaffold_166338
Species: uncultured crenarchaeote 76h13 (50%)
2 1482 bp 39.68 2.02 94.74
13_1_40cm_2_scaffold_152298
Species: AR5 (50%)
2 2057 bp 42.78 3.06 74.38
13_1_40cm_2_scaffold_349211
Species: uncultured marine thaumarchaeote KM3_66_E12 (50%)
2 1011 bp 37.49 2.37 95.25
13_1_40cm_2_scaffold_308366
Species: Candidatus Nitrososphaera evergladensis (50%)
2 1091 bp 36.66 1.10 70.39
13_1_40cm_2_scaffold_278337
Species: uncultured archaeon (50%)
2 1149 bp 42.21 1.31 98.43
13_1_40cm_2_scaffold_40045
Species: CSP1_1_Thaumarchaeota (50%)
2 2919 bp 39.47 5.60 57.55
13_1_40cm_2_scaffold_300782
Species: Nitrososphaera viennensis (50%)
2 1105 bp 43.08 4.89 65.43
13_1_40cm_2_scaffold_295237
Species: uncultured archaeon (50%)
2 1116 bp 37.01 1.34 93.55
13_1_40cm_2_scaffold_209845
Species: CSP1_1_Thaumarchaeota (50%)
2 1324 bp 36.03 1.36 88.60
13_1_40cm_2_scaffold_253054
Species: uncultured archaeon (50%)
2 1205 bp 39.09 1.49 88.13
13_1_40cm_2_scaffold_430033
Species: marine sediment metagenome (50%)
2 1357 bp 42.08 7.18 100.81
13_1_40cm_2_scaffold_227308
Species: CSP1_1_Thaumarchaeota (50%)
2 1273 bp 37.71 7.07 94.97
13_1_40cm_2_scaffold_128044
Species: uncultured marine thaumarchaeote KM3_198_G09 (50%)
2 2111 bp 39.79 5.88 99.91
13_1_40cm_2_scaffold_143230
Species: Nitrososphaera viennensis (50%)
2 1594 bp 36.76 3.39 67.57
13_1_40cm_2_scaffold_285276
Species: AR5 (50%)
2 1135 bp 39.12 2.64 83.52
13_1_40cm_2_scaffold_258902
Species: uncultured crenarchaeote (50%)
2 1191 bp 35.26 1.76 62.72
13_1_40cm_2_scaffold_324191
Species: uncultured crenarchaeote (50%)
2 1062 bp 38.98 1.84 36.72
13_1_40cm_2_scaffold_56520
Species: Marine Group I thaumarchaeote SCGC AAA799-D07 (50%)
2 2498 bp 41.07 2.16 84.31
13_1_40cm_2_scaffold_339357
Species: CSP1_1_Thaumarchaeota (50%)
2 1033 bp 34.27 3.92 54.60
13_1_40cm_2_scaffold_94014
Species: uncultured Candidatus Nitrosocaldus sp. (50%)
2 2487 bp 39.20 2.41 96.26
13_1_40cm_2_scaffold_181495
Species: uncultured archaeon (50%)
2 1421 bp 33.85 1.48 75.79
13_1_40cm_2_scaffold_206544
Species: CSP1_1_Thaumarchaeota (50%)
2 1335 bp 37.60 4.04 98.88
13_1_40cm_2_scaffold_207992
Species: CSP1_1_Thaumarchaeota (50%)
2 1330 bp 37.74 3.95 84.36
13_1_40cm_2_scaffold_315446
Species: CSP1_1_Thaumarchaeota (50%)
2 1078 bp 36.55 1.95 43.97
13_1_40cm_2_scaffold_236292
Species: CSP1_1_Thaumarchaeota (50%)
2 1248 bp 37.82 2.16 95.91
13_1_40cm_2_scaffold_501493
Species: CSP1_1_Thaumarchaeota (50%)
2 1166 bp 36.54 4.25 89.28
Displaying items 101-150 of 216 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.