ggKbase home page
Advanced Search
Search Help

A1-16-all-fractions_metab_12

wsip-metawrap-drep-bins_Actinobacteria_71_1
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.66 Longest contig: 21.82 Kbp Bin length: 5.34 Mbp GC content: 70.72 %
Contigs count: 1126 Features count: 5687 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 8 BSCG 37 / 51 MC: 13 ASCG 10 / 38 MC: 1
Displaying items 101-150 of 1126 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A1-16-all-fractions_k255_2514595
Class: Actinobacteria (50%)
10 7087 bp 71.48 0.32 91.01
A1-16-all-fractions_k255_2518301
Genus: Streptomyces (50%)
10 6571 bp 68.00 1.00 83.46
A1-16-all-fractions_k255_1403724
Class: Actinobacteria (90%)
10 9353 bp 71.66 0.48 92.95
A1-16-all-fractions_k255_4841662
Class: Actinobacteria (80%)
10 13699 bp 72.04 0.64 94.63
A1-16-all-fractions_k255_2588936
Class: Actinobacteria (80%)
10 9614 bp 68.71 0.61 89.06
A1-16-all-fractions_k255_147834
Class: Actinobacteria (80%)
10 7545 bp 72.33 0.48 93.28
A1-16-all-fractions_k255_2608534
Class: Actinobacteria (80%)
10 9651 bp 73.19 0.68 92.45
A1-16-all-fractions_k255_3813890
Class: Actinobacteria (90%)
10 9091 bp 71.24 0.69 92.37
A1-16-all-fractions_k255_5059995
Class: Actinobacteria (80%)
10 12368 bp 72.06 0.46 87.66
A1-16-all-fractions_k255_406096
Class: Actinobacteria (90%)
10 4603 bp 67.09 1.66 92.55
A1-16-all-fractions_k255_2867154
Order: Streptosporangiales (70%)
10 8525 bp 70.10 0.53 89.03
A1-16-all-fractions_k255_2926957
Order: Streptosporangiales (50%)
10 10246 bp 72.18 0.38 86.23
A1-16-all-fractions_k255_2934927
Class: Actinobacteria (90%)
10 12253 bp 71.20 0.38 97.10
A1-16-all-fractions_k255_532256
Class: Actinobacteria (50%)
10 9454 bp 72.15 0.54 90.63
A1-16-all-fractions_k255_4067961
Order: Streptosporangiales (50%)
10 12305 bp 71.40 0.39 87.23
A1-16-all-fractions_k255_4146245
Order: Streptosporangiales (50%)
10 13252 bp 72.96 0.61 91.96
A1-16-all-fractions_k255_1930976
Class: Actinobacteria (60%)
10 13661 bp 72.10 0.46 92.72
A1-16-all-fractions_k255_4160005
Class: Actinobacteria (90%)
10 8201 bp 71.55 0.55 89.59
A1-16-all-fractions_k255_3102398
Class: Actinobacteria (88.89%)
9 8636 bp 71.84 0.35 89.90
A1-16-all-fractions_k255_3191346
Class: Actinobacteria (66.67%)
9 8337 bp 69.08 0.47 87.23
A1-16-all-fractions_k255_1018109
Genus: Streptomyces (55.56%)
9 8720 bp 68.59 0.60 90.52
A1-16-all-fractions_k255_4427800
Order: Pseudonocardiales (66.67%)
9 8525 bp 71.86 0.46 95.16
A1-16-all-fractions_k255_1046905
Order: Streptosporangiales (66.67%)
9 8720 bp 71.31 0.46 88.25
A1-16-all-fractions_k255_4472309
Class: Actinobacteria (77.78%)
9 7055 bp 70.55 0.79 87.73
A1-16-all-fractions_k255_4480663
Class: Actinobacteria (88.89%)
9 6802 bp 71.92 0.29 90.81
A1-16-all-fractions_k255_2317381
Class: Actinobacteria (88.89%)
9 6780 bp 69.90 0.46 92.79
A1-16-all-fractions_k255_3459993
Class: Actinobacteria (88.89%)
9 6609 bp 71.77 0.54 94.46
A1-16-all-fractions_k255_2425315
Class: Actinobacteria (100%)
9 11712 bp 71.06 0.41 84.63
A1-16-all-fractions_k255_1285642
Class: Actinobacteria (100%)
9 4478 bp 67.60 1.91 93.79
A1-16-all-fractions_k255_1289265
Class: Actinobacteria (100%)
9 14168 bp 70.73 0.64 93.36
A1-16-all-fractions_k255_1315046
Order: Streptosporangiales (55.56%)
9 5462 bp 70.74 0.91 90.46
A1-16-all-fractions_k255_25514
Class: Actinobacteria (66.67%)
9 6127 bp 70.15 0.32 89.70
A1-16-all-fractions_k255_2502021
Order: Streptosporangiales (55.56%)
9 8580 bp 70.64 0.52 91.22
A1-16-all-fractions_k255_3633761
Class: Actinobacteria (66.67%)
9 7310 bp 70.83 0.70 90.25
A1-16-all-fractions_k255_89474
Genus: Streptomyces (55.56%)
9 9637 bp 68.92 0.26 91.74
A1-16-all-fractions_k255_2567350
Class: Actinobacteria (55.56%)
9 9454 bp 71.50 0.51 88.25
A1-16-all-fractions_k255_143997
Class: Actinobacteria (100%)
9 7870 bp 71.56 0.55 87.41
A1-16-all-fractions_k255_178119
Class: Actinobacteria (77.78%)
9 7010 bp 70.14 0.79 83.07
A1-16-all-fractions_k255_3741130
Class: Actinobacteria (55.56%)
9 7650 bp 70.54 0.59 87.80
A1-16-all-fractions_k255_1504433
Class: Actinobacteria (100%)
9 6929 bp 71.06 0.30 87.50
A1-16-all-fractions_k255_2682406
Order: Streptosporangiales (77.78%)
9 9721 bp 70.24 0.49 94.81
A1-16-all-fractions_k255_265660
Class: Actinobacteria (100%)
9 6807 bp 71.43 0.48 90.88
A1-16-all-fractions_k255_1538475
Class: Actinobacteria (55.56%)
9 8055 bp 70.35 0.61 92.51
A1-16-all-fractions_k255_3794629
Order: Streptosporangiales (55.56%)
9 6757 bp 69.54 4.88 98.12
A1-16-all-fractions_k255_309854
Class: Actinobacteria (88.89%)
9 10102 bp 70.52 0.40 79.71
A1-16-all-fractions_k255_1662516
Order: Pseudonocardiales (77.78%)
9 8780 bp 69.84 0.65 96.87
A1-16-all-fractions_k255_370785
Class: Actinobacteria (66.67%)
9 11747 bp 69.68 0.49 85.94
A1-16-all-fractions_k255_3943708
Class: Actinobacteria (77.78%)
9 6911 bp 71.83 0.50 84.65
A1-16-all-fractions_k255_4009871
Class: Actinobacteria (55.56%)
9 8759 bp 69.21 0.58 95.05
A1-16-all-fractions_k255_4016332
Class: Actinobacteria (88.89%)
9 11890 bp 70.81 0.71 91.87
Displaying items 101-150 of 1126 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.