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A1-18-all-fractions_k255_1154143_23

Organism: A1-18-all-fractions_metab_conc_44

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(21572..23191)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Afipia birgiae RepID=UPI0002E6C825 similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 548.0
  • Bit_score: 821
  • Evalue 4.10e-235
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.1
  • Coverage: 545.0
  • Bit_score: 815
  • Evalue 4.10e-233
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 75.8
  • Coverage: 546.0
  • Bit_score: 811
  • Evalue 9.30e-233

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1620
CTGTGCGAGAGCCCGCTCACCTTCCAGGCCATCATCATTTGGCGCGACGAGCTCAACGAGGGAAAGGTGTTCCTGCGCGACATCATCGACCTCGAAGCGACCTATGCCGGGCCCGACGCCAAGGCCATGCCGGCGCCGGTGAGCAGCCCCGACGGCCAGCCGATCGTGGCGCCGCCCGGCGCGCCGCCGGTTCCCGGCTCGCCCGTGCTGGCGCAGACGCCGGCGCCGCCCGCCGCGCCCGTGGGCACGACCCCGTTCAAGGGCGCGCCCGAGCGCGCCAACGGCGATGAAGGCAAGGGCGGCGAACCCGCGCCCGGCGAAGGCGATTTCGACGACGACGATATGGAGAATTCGCTCTCGCTTCCCGCCATCGAGGCCGAACTCAAGCCAAAGGTGGTCGAGACCTTCGACAACATCGCCAGCGAATACAAGCGGCTGCGCCGCCTGCAGGACCAAGACATCCAGAACAAGCTGCGCAACGATTCGCTCTCGCCGGCGCAGGAGCGCCGCTACAAGAAGCTCAAGGACGACATCATCAGCGAGGTGAAGTCGCTGCGGCTCAACCAGGCGCGCATCGACGCGCTGGTCGAGCAGCTTTACGACATCAACAAGCGGCTCGTCGGCTACGAGGGCCGCCTGATGCGGCTCGCCGAGGGCCACGGGGTCGCGCGCGAGGATTTTCTCAAGAACTACCAGGGCTCCGAGCTCGATCCGCTCTGGCTCAACCGCGTGTCCAAACTGAGCGCAAAAGGCTGGAAGAGCCTCGTCGCGCGGGACAAGGACAAGGTCAAGCAGCACCGCCATGAAATCCAGGTGCTCGCCGGCGAGACCGGGCTCGAGATCGGTGAGTTCCGCAAGATCGTGCAGATGGTGCAGAAGGGCGACCGCGAGGCGCACCAGGCCAAGAAGGAGATGGTGGAGGCGAATCTGCGCCTCGTCATGTCGATCGCCAAGAAATACATCTACCGCGGCCTGCAATTCCTCGACCTGATCCAGGAAGGCAATATCGGCTTGATGAAGGCAGTCGATAAGTTCGAGTACCGCCGCGGCTACAAGTTCTCGACGTATGCCACCTGGTGGATCCGGCAGGCAATCACGCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCAGTGCATATGATGGATGCCATCTCCAAGGTCGCGCGTACGAGGCGGCTGCTCATCAACGAGATCGGCCGCGAGCCCACGCCCGAGGAGCTTGCCGAAAAGGTCGGCATGCCGCTCGAGAAGGTGCGCAGAGTGCTCAAGATCGTCAGGGAGCCGCTGTCGCTGGAGACGCCCGTCGGCGACGAGGAGGATTCCCATCTCGGCGATTTCATCGAGGACCAGAACACACTCCTGCCCCTCGACGCCGTCATCCAGTCGAGCCTGCGCGAGACCACGACGCGCACGCTTTCCCAGCTCACGCCGCGCGAAGAGCGCGTTCTGCGCCTGCGTTTCGGCATCGGGATGAACAAGGACCACACGCTGGAAGAGGTCGGCCTGCAATACTCGGTCACACGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTAAGGAAGCTGAGGCACCCGAGCCGGTCGAGGATTCTCAGAACCTTCCTCGATAGTTGA
PROTEIN sequence
Length: 540
LCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKAMPAPVSSPDGQPIVAPPGAPPVPGSPVLAQTPAPPAAPVGTTPFKGAPERANGDEGKGGEPAPGEGDFDDDDMENSLSLPAIEAELKPKVVETFDNIASEYKRLRRLQDQDIQNKLRNDSLSPAQERRYKKLKDDIISEVKSLRLNQARIDALVEQLYDINKRLVGYEGRLMRLAEGHGVAREDFLKNYQGSELDPLWLNRVSKLSAKGWKSLVARDKDKVKQHRHEIQVLAGETGLEIGEFRKIVQMVQKGDREAHQAKKEMVEANLRLVMSIAKKYIYRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMMDAISKVARTRRLLINEIGREPTPEELAEKVGMPLEKVRRVLKIVREPLSLETPVGDEEDSHLGDFIEDQNTLLPLDAVIQSSLRETTTRTLSQLTPREERVLRLRFGIGMNKDHTLEEVGLQYSVTRERIRQIEAKALRKLRHPSRSRILRTFLDS*