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H1-18-all-fractions_k255_4272262_2

Organism: H1-18-all-fractions_conc_125

near complete RP 31 / 55 MC: 3 BSCG 47 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(1097..1651)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=3 Tax=Amycolatopsis mediterranei RepID=D8HU53_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 182.0
  • Bit_score: 242
  • Evalue 2.10e-61
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 182.0
  • Bit_score: 242
  • Evalue 5.90e-62
RNA polymerase sigma-70 factor, ECF subfamily protein {ECO:0000313|EMBL:EOD64440.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.8
  • Coverage: 182.0
  • Bit_score: 242
  • Evalue 2.90e-61

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Taxonomy

Amycolatopsis vancoresmycina → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGATCGGACGACGTTCCCGGCGCGTAGGTGCCTCGAACCCGGCCGAAGACTTGATCAAGTCTCTCTACGCCGAACACGGCCGTAGCCTCCTGGACTATGCGACCAGGCTGACCGGCGACCGCGCCGCTGCCGAGGACGTCGTGCAGGAGACGCTGCTGCGGGCGTGGAAACACGCGGACGCGCTGCGCTCCGGCGTCGGCTCGGTCCGCGGCTGGCTGCTGACGGTGGCGCGCAACCTCGTCACCGACCGGGCCAGGGCCCGCGCGGTCCGGCCGATGGAGGTCAACCAGCCGGTTGACGTCCCGGCCGCCCAGCGCGACCACGCGGACACGGTCGTCGACACGATGACCGTGATGGGCGCGCTGGAGGGCCTGTCAGCCGAGCACCGGGCGGTGCTCGTGGAGCTCTACTACCGGGGCAGGACCGTCAACGAGACGGCGGCCGTGCTCGGCATCGCCCCCGGTACCGTGAAATCGAGGACTTACCACGCGGTCCGCGCGCTGCGGGCGCAGCTGGCGCAGTCCCTGGGACAGTCGGGGGAGGTGCGGCGATGA
PROTEIN sequence
Length: 185
MIGRRSRRVGASNPAEDLIKSLYAEHGRSLLDYATRLTGDRAAAEDVVQETLLRAWKHADALRSGVGSVRGWLLTVARNLVTDRARARAVRPMEVNQPVDVPAAQRDHADTVVDTMTVMGALEGLSAEHRAVLVELYYRGRTVNETAAVLGIAPGTVKSRTYHAVRALRAQLAQSLGQSGEVRR*