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H1-18-all-fractions_k255_4125925_4

Organism: H1-18-all-fractions_conc_125

near complete RP 31 / 55 MC: 3 BSCG 47 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(1621..2022)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237AD24 similarity UNIREF
DB: UNIREF100
  • Identity: 49.2
  • Coverage: 132.0
  • Bit_score: 114
  • Evalue 4.70e-23
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EWC58218.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.4
  • Coverage: 134.0
  • Bit_score: 152
  • Evalue 3.70e-34
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 48.6
  • Coverage: 140.0
  • Bit_score: 112
  • Evalue 5.10e-23

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Taxonomy

Actinokineospora spheciospongiae → Actinokineospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 402
GTGCAGGAGACCTGGCTGCGTGCGTGGCGCAACGTCGACCGGCTCGCCGGGATCGCGTCGGTGCGGTCCTGGCTGATGCGCATCGCCCACAACGTGGCCATCGACCAGCACCGCAGGCGCCAGGCGCGGCCCACCGAGGTGGAGCTGCCCGACCACGGGTTCGAGAACGCCGCCGTCGCCGTCGCCCCGTGTGAGGAGGTGGAGACCCGCATCGACGTCGACGCGGTGCTCGAGCACCTGCCCGCCGCGCACCGCCAGACGCTGGTCGAGGTCTACTTCGCCGACCGCACCGCCGTCGCGGCCGCGACGGTGCTCGGCGTCCCGGTCGGCACCGTCAAGAGCCGCGTCCACAAGGCGCTCCGCACCCTGCGCGCGGGCGAGTCCCTGATGGCGGCGGCGTGA
PROTEIN sequence
Length: 134
VQETWLRAWRNVDRLAGIASVRSWLMRIAHNVAIDQHRRRQARPTEVELPDHGFENAAVAVAPCEEVETRIDVDAVLEHLPAAHRQTLVEVYFADRTAVAAATVLGVPVGTVKSRVHKALRTLRAGESLMAAA*